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BaseInfo

ncRNA ID vvi-miR3637-3p
Species Vitis vinifera
Class miRNA
Genome position chr16:20659651-20659852 [-]
Reference genome Genoscope-20100122
Source miRBase
Length 24
Mature sequence(if miRNA) 43 - UUUCGACAAGACACAAUGCAUAAA - 66
Stem-loop(if miRNA) U    UG   A   U  GA    U                                                UGU       GUUUGAUUUUGAAACUGACA
 GACA  AUG CAU AU  GUAA AUUUUAUAAAAUUAAGGGUAUUUAUGUAUUGUGUUUUGUCGGAAAAUA   UUGGAUA                    U
 ||||  ||| ||| ||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||                    U
 CUGU  UAC GUA UG  UAUU UAAAAUAUUUUAAUUCUCGUAAAUACGUAACACAGAACAGCUUUUUAU   CAUAAUA                    A
G    GU   C   -  AG    -                                                ---       GGUUAUUAUGUCAGCCUUAU
Stem-loop sequence UGACAUGAUGACAUUAUGAGUAAUAUUUUAUAAAAUUAAGGGUAUUUAUGUAUUGUGUUUUGUCGGAAAAUAUGUUUGGAUAGUUUGAUUUUGAAACUGACAUUAUAUUCCGACUGUAUUAUUGGAUAAUACUAUUUUUCGACAAGACACAAUGCAUAAAUGCUCUUAAUUUUAUAAAAUUUAUGAGUAUGCCAUUGUGUCG

Reference

1 PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis";
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J;
Plant J. 62:960-976(2010).