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BaseInfo

ncRNA ID	vvi-miR845a
Species	Vitis vinifera
Class	miRNA
Genome position	chr16:20504749-20505190 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	412 - UAGCUCUGAUACCAAUUGAUA - 432
Stem-loop(if miRNA)	UUUCA   -----G       -CCU   U      ------    AAGUAAUCUCCAAA   C  --- AGC    UUACAU  --- C    UCUAUUAUAUUCAUUCCUAUCCAUAGCACAUUGCAAAGUAAAAACGACUUUAGCAUUUAAUUGAAAAUUUCUUCUAUCAAGCUCAUUCCAUUCUUGCUUGGGUUUUGGAACCAAAAUUCCAUCAACUAAUUUAGUGGGUAAAGUUGGG      CUU      AUUAGUU    UCA GAGUUA      UUGC              UUU CU   U   GGAU      UG   A AUAU                                                                                                                                                    C      |||      |||||||    ||| ||||||      ||||              ||| ||   |   ||||      ||   | ||||                                                                                                                                                    C      GAA      UAGUUAA    AGU CUCGAU      AACG              CUG AA   G   UAGA      UU   C UUUU                                                                                                                                                    A ---CG   ACAAAA       CCAU   -      CUGGAG    ----------AAUU   -  UUA ---    ------  CUC -    ACCGAUAAGGUAGUUCGAGUAGAGUUUGACUUUUAACAAGUUUUGUAUCUCGAGGUAAGAAAUGCCCUUGGCUGAUAGGGAUAACCUUUCGAUCUUACUGAACCAUGAAUGUUAGUUGACUAAAUCUACAUACCCUACGGUAACUUCU
Stem-loop sequence	UUUCACUUGAUUAGUUCCUUCAUGAGUUAUUGCAAGUAAUCUCCAAAUUUCCUUAGCGGAUUUACAUUGACAUAUUCUAUUAUAUUCAUUCCUAUCCAUAGCACAUUGCAAAGUAAAAACGACUUUAGCAUUUAAUUGAAAAUUUCUUCUAUCAAGCUCAUUCCAUUCUUGCUUGGGUUUUGGAACCAAAAUUCCAUCAACUAAUUUAGUGGGUAAAGUUGGGCCAUCUUCAAUGGCAUCCCAUACAUCUAAAUCAGUUGAUUGUAAGUACCAAGUCAUUCUAGCUUUCCAAUAGGGAUAGUCGGUUCCCGUAAAGAAUGGAGCUCUAUGUUUUGAACAAUUUUCAGUUUGAGAUGAGCUUGAUGGAAUAGCCAUUUUCCUCUUAGAUGAUUAAGUCUUAAGCAAGAGGUCUAGCUCUGAUACCAAUUGAUAAAACAAAGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA162649.1	ncRNA:21   AUAGUU-AACCAUAGUCUCGAU   1   **||||-||||||||||||||| targets:13   CUUCAACUUGGUAUCAGAGCUA   34 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_28285_Transcript_5/7_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010653322.2	ncRNA:21   AUAGUU-AACCAUAGUCUCGAU   1   **||||-||||||||||||||| targets:55   CUUCAACUUGGUAUCAGAGCUA   76 Target Full Sequence	2.0	PREDICTED: Vitis vinifera uncharacterized LOC104879667 (LOC104879667), mRNA	NA	coding protein	psRNATarget
XM_019225115.1	ncRNA:21   AUAGUU-AACCAUAGUCUCGAU   1   **||||-||||||||||||||| targets:70   CUUCAAGUUGGUAUCAGAGCUA   91 Target Full Sequence	2.0	PREDICTED: Vitis vinifera nuclear pore complex protein NUP98A-like (LOC104881375), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019225114.1	ncRNA:21   AUAGUU-AACCAUAGUCUCGAU   1   **||||-||||||||||||||| targets:70   CUUCAAGUUGGUAUCAGAGCUA   91 Target Full Sequence	2.0	PREDICTED: Vitis vinifera nuclear pore complex protein NUP98A-like (LOC104881375), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019217151.1	ncRNA:21   AUAGUU-AACCAUAGUCUCGAU   1   **||||-||||||||||||||| targets:88   CUUCAACUUGGUAUCAGAGCUA   109 Target Full Sequence	2.0	PREDICTED: Vitis vinifera uncharacterized LOC109121825 (LOC109121825), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019217149.1	ncRNA:21   AUAGUU-AACCAUAGUCUCGAU   1   **||||-||||||||||||||| targets:88   CUUCAACUUGGUAUCAGAGCUA   109 Target Full Sequence	2.0	PREDICTED: Vitis vinifera uncharacterized LOC109121825 (LOC109121825), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019217150.1	ncRNA:21   AUAGUU-AACCAUAGUCUCGAU   1   **||||-||||||||||||||| targets:88   CUUCAACUUGGUAUCAGAGCUA   109 Target Full Sequence	2.0	PREDICTED: Vitis vinifera uncharacterized LOC109121825 (LOC109121825), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010658145.2	ncRNA:21   AUAGUUAACCAUAGUCUCGAU   1   *|*|||||||||||||||||* targets:41   CAACAAUUGGUAUCAGAGCUU   61 Target Full Sequence	2.0	PREDICTED: Vitis vinifera uncharacterized LOC104880663 (LOC104880663), mRNA	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).