| ncRNA ID | vvi-miR3640-5p |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr16:11986826-11987025 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 24 |
| Mature sequence(if miRNA) | 42 - ACCUGAUUGGUGAUGCUUUUUUGG - 65 |
| Stem-loop(if miRNA) |
U G C C A C A CC C -AAA U UUUCGAUCCUAUAG GGGUAUAA G AAUGG ACC GA G UGUACACGUG CA ACCUGAUUGGUGAUGCUUUUUUGGUA AUAUUGA GGG AUC U |||||||| | ||||| ||| || | |||||||||| || |||||||||||||||||||||||||| ||||||| ||| ||| A CCCAUAUU U UUACU UGG CU C ACGUGUGCAC GU UGGACUAACUACUACGGAAAAGCUAU UAUGACU UCG UAU U U G C A - A C AA C AUAU - GAGGCCCAAACUAG |
| Stem-loop sequence | GGGUAUAAUGGAAUGGCACCCGAAGCUGUACACGUGACACCACCUGAUUGGUGAUGCUUUUUUGGUACAUAUUGAAAAGGGUAUCUUUCGAUCCUAUAGUAUGAUCAAACCCGGAGUAUGCUUAUAUCAGUAUCUAUCGAAAAGGCAUCAUCAAUCAGGUAAUGCCACGUGUGCAACUCAGGUCUCAUUGUUUUAUACCC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA148270.1 |
|
0.0 | TSA: Vitis vinifera Locus_2643_Transcript_10/13_Confidence_0.107.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| FQ382621.1 |
|
3.0 | Vitis vinifera clone SS0ABG50YC15 | NA | coding protein | psRNATarget |
| 1 | PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010). |