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BaseInfo

ncRNA ID vvi-miR3627-3p
Species Vitis vinifera
Class miRNA
Genome position chr14:28302547-28302693 [-]
Reference genome Genoscope-20100122
Source miRBase
Length 21
Mature sequence(if miRNA) 38 - UCGCCGCUCUCCUGUGACAAG - 58
Stem-loop(if miRNA) GA   AAA    -   A --AA           -    U                A    AC     -      UAG
  AGG   GCGA GAA G    AGAGGGGUUGG GGGU UCUUGUCGCAGGAGAG CGGC  UUGCU CUUGUG   C
  |||   |||| ||| |    ||||||||||| |||| |||||||||||||||| ||||  ||||| ||||||
  UCC   CGCU CUU C    UUUCUUCGACU CCCA AGAACAGUGUCCUCUC GCCG  AACGG GAACGU   A
CA   ---    U   A AUCC           U    U                -    CU     C      UAA
Stem-loop sequence GAAGGAAAGCGAGAAAGAAAGAGGGGUUGGGGGUUUCUUGUCGCAGGAGAGACGGCACUUGCUCUUGUGUAGCAAAUUGCAAGCGGCAAUCGCCGCUCUCCUGUGACAAGAUACCCUUCAGCUUCUUUCCUACAUUCUUCGCCCUAC

Reference

1 PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis";
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J;
Plant J. 62:960-976(2010).