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BaseInfo

ncRNA ID	vvi-miR3627-5p
Species	Vitis vinifera
Class	miRNA
Genome position	chr14:28302547-28302693 [-]
Reference genome	Genoscope-20100122
Source	miRBase
Length	22
Mature sequence(if miRNA)	89 - UUGUCGCAGGAGAGACGGCACU - 110
Stem-loop(if miRNA)	GA   AAA    -   A --AA           -    U                A    AC     -      UAG   AGG   GCGA GAA G    AGAGGGGUUGG GGGU UCUUGUCGCAGGAGAG CGGC  UUGCU CUUGUG   C   |||   |||| ||| |    ||||||||||| |||| |||||||||||||||| ||||  ||||| ||||||   UCC   CGCU CUU C    UUUCUUCGACU CCCA AGAACAGUGUCCUCUC GCCG  AACGG GAACGU   A CA   ---    U   A AUCC           U    U                -    CU     C      UAA
Stem-loop sequence	GAAGGAAAGCGAGAAAGAAAGAGGGGUUGGGGGUUUCUUGUCGCAGGAGAGACGGCACUUGCUCUUGUGUAGCAAAUUGCAAGCGGCAAUCGCCGCUCUCCUGUGACAAGAUACCCUUCAGCUUCUUUCCUACAUUCUUCGCCCUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA138596.1	ncRNA:22   UCACGGCAGAGAGGACGCUGUU   1   =|||=|*||||||||||||||= targets:182   GGUGUCAUCUCUCCUGCGACAG   203 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_1488_Transcript_4/9_Confidence_0.592.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA138597.1	ncRNA:22   UCACGGCAGAGAGGACGCUGUU   1   =|||=|*||||||||||||||= targets:182   GGUGUCAUCUCUCCUGCGACAG   203 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_1488_Transcript_8/9_Confidence_0.592.Vivi mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010).