| ncRNA ID | vvi-miR164d |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr14:1414565-1414682 [-] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 88 - UGGAGAAGCAGGGCACGUGCA - 108 |
| Stem-loop(if miRNA) |
--A U A CA UU CAAAUUCUAAUC CU A AGCUC UG UGGAGAAG GGGCACGUGCAG CA UG CUGC C ||||| || |||||||| |||||||||||| || || |||| UUGGG AC ACCUCUUC CUCGUGCACGUC GU AC GACG G UCC U A CC UC CUAAUCUUAAAC UU U |
| Stem-loop sequence | AAGCUCUUGAUGGAGAAGCAGGGCACGUGCAGUUCACAAAUUCUAAUCUGCUCUGCACGUGCAGUUCACAAAUUCUAAUCUGCUCUGCACGUGCUCCCCUUCUCCAACAUGGGUUCCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_002284789.3 |
|
0.0 | PREDICTED: Vitis vinifera NAC domain-containing protein 100-like (LOC100251801), mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010645872.2 |
|
1.5 | PREDICTED: Vitis vinifera protein CUP-SHAPED COTYLEDON 2 (LOC100246914), mRNA | NA | coding protein | psRNATarget | |||||||||
| KA145008.1 |
|
1.5 | TSA: Vitis vinifera Locus_18694_Transcript_3/4_Confidence_0.500.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA145009.1 |
|
1.5 | TSA: Vitis vinifera Locus_18694_Transcript_4/4_Confidence_0.625.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_002283775.3 |
|
1.5 | PREDICTED: Vitis vinifera NAC domain-containing protein 100 (LOC100250998), mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_002271422.3 |
|
2.0 | PREDICTED: Vitis vinifera NAC domain-containing protein 21/22 (LOC100254239), mRNA | NA | coding protein | psRNATarget | |||||||||
| KA155909.1 |
|
2.0 | TSA: Vitis vinifera Locus_21942_Transcript_2/2_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA155908.1 |
|
2.0 | TSA: Vitis vinifera Locus_21942_Transcript_1/2_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |