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BaseInfo

ncRNA ID	vvi-miR3628-3p
Species	Vitis vinifera
Class	miRNA
Genome position	chr13:16716055-16716204 [-]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	32 - CUAAGCACAGCUCUCGCAUCC - 52
Stem-loop(if miRNA)	GAUUAUU  UG UAA                           C          UGCCAC  ACUAAGAUUAUU GAAU       GU  U   AGAGAUAAUGGAAAGGGAUGCGAGAGC GUGCUUAGUA      CU            G ||||       ||  |   ||||||||||||||||||||||||||| ||||||||||      ||            A CUUG       CG  A   UCUCUAUUACCUUUCCCUACGCUCUCG CACGAAUCGU      AC            A     -GCCCUU  GU --C                           A          ----CU  UUCAAAAUAUAU
Stem-loop sequence	GAAUGAUUAUUGUUGUUAAAGAGAUAAUGGAAAGGGAUGCGAGAGCCGUGCUUAGUAUGCCACCUACUAAGAUUAUUGAAUAUAUAAAACUUCAUCUGCUAAGCACAGCUCUCGCAUCCCUUUCCAUUAUCUCUCAUGGCUUCCCGGUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA143160.1	ncRNA:21   CCUACGCUCUCGACACGAAUC   1   ||||||||||||||||||||| targets:1464   GGAUGCGAGAGCUGUGCUUAG   1484 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_9473_Transcript_1/3_Confidence_0.714.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA143161.1	ncRNA:21   CCUACGCUCUCGACACGAAUC   1   ||||||||||||||||||||| targets:1509   GGAUGCGAGAGCUGUGCUUAG   1529 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_9473_Transcript_2/3_Confidence_0.714.Vivi mRNA sequence	NA	coding protein	psRNATarget
AB911341.1	ncRNA:21   CCUACGCUCUCGACACGAAUC   1   **|||*|=||||||||||||* targets:659   ACAUGGGGGAGCUGUGCUUAU   679 Target Full Sequence	3.0	Vitis vinifera MYBPAR mRNA for R2R3 MYB transcription factor, complete cds	NA	coding protein	psRNATarget
KA138776.1	ncRNA:21   CCUACGCUCUCGACACGAAUC   1   **|||*|=||||||||||||* targets:735   ACAUGGGGGAGCUGUGCUUAU   755 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_24188_Transcript_1/2_Confidence_0.556.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_003633043.3	ncRNA:21   CCUACGCUCUCGACACGAAUC   1   **|||*|=||||||||||||* targets:774   ACAUGGGGGAGCUGUGCUUAU   794 Target Full Sequence	3.0	PREDICTED: Vitis vinifera transcription factor TT2 (LOC100254224), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:20230504 "Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010).