| ncRNA ID | vvi-miR3628-5p |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr13:16716055-16716204 [-] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 94 - AUGCGAGAGCCGUGCUUAGUA - 114 |
| Stem-loop(if miRNA) |
GAUUAUU UG UAA C UGCCAC ACUAAGAUUAUU GAAU GU U AGAGAUAAUGGAAAGGGAUGCGAGAGC GUGCUUAGUA CU G |||| || | ||||||||||||||||||||||||||| |||||||||| || A CUUG CG A UCUCUAUUACCUUUCCCUACGCUCUCG CACGAAUCGU AC A -GCCCUU GU --C A ----CU UUCAAAAUAUAU |
| Stem-loop sequence | GAAUGAUUAUUGUUGUUAAAGAGAUAAUGGAAAGGGAUGCGAGAGCCGUGCUUAGUAUGCCACCUACUAAGAUUAUUGAAUAUAUAAAACUUCAUCUGCUAAGCACAGCUCUCGCAUCCCUUUCCAUUAUCUCUCAUGGCUUCCCGGUUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA143160.1 |
|
0.0 | TSA: Vitis vinifera Locus_9473_Transcript_1/3_Confidence_0.714.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA143161.1 |
|
0.0 | TSA: Vitis vinifera Locus_9473_Transcript_2/3_Confidence_0.714.Vivi mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:20230504
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"; Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J; Plant J. 62:960-976(2010). |