| ncRNA ID | vvi-miR160a |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr12:10147157-10147259 [-] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 23 |
| Mature sequence(if miRNA) | 71 - UGCCUGGCUCCCUGAAUGCCAUC - 93 |
| Stem-loop(if miRNA) |
------ UGAU C - A U A CUU G GGGGU CUGC UGGCUCC CUGA UGCCA CUA GAAG GUCAA G ||||| |||| ||||||| |||| ||||| ||| |||| ||||| U CCCCG GACG ACUGAGG GACU ACGGU GAU CUUC CAGUU U UUACAA ---- U A - U C UCU G |
| Stem-loop sequence | GGGGUUGAUCUGCCUGGCUCCCUGAAUGCCAUCUAAGAAGCUUGUCAAGGUUGUUGACUCUCUUCCUAGUUGGCAUCAGAGGAGUCAUGCAGGCCCCAACAUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA137213.1 |
|
0.0 | TSA: Vitis vinifera Locus_47313_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA142895.1 |
|
1.0 | TSA: Vitis vinifera Locus_41650_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| FQ394421.1 |
|
1.0 | Vitis vinifera clone SS0AFA20YN23 | NA | coding protein | psRNATarget | |||||||||
| XM_002284292.4 |
|
1.0 | PREDICTED: Vitis vinifera auxin response factor 17 (LOC100255673), mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_002281450.3 |
|
1.0 | PREDICTED: Vitis vinifera auxin response factor 18 (LOC100251645), mRNA | NA | coding protein | psRNATarget | |||||||||
| KA151445.1 |
|
1.0 | TSA: Vitis vinifera Locus_6640_Transcript_1/2_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA163847.1 |
|
1.0 | TSA: Vitis vinifera Locus_5786_Transcript_3/8_Confidence_0.409.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_019220515.1 |
|
1.0 | PREDICTED: Vitis vinifera auxin response factor 18 (LOC100256989), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010660097.2 |
|
1.0 | PREDICTED: Vitis vinifera auxin response factor 18 (LOC100265118), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010652870.2 |
|
1.0 | PREDICTED: Vitis vinifera auxin response factor 18 (LOC100256989), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_002273554.3 |
|
1.0 | PREDICTED: Vitis vinifera auxin response factor 18 (LOC100265118), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_002282401.3 |
|
1.0 | PREDICTED: Vitis vinifera auxin response factor 18 (LOC100256989), transcript variant X1, mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |