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BaseInfo

ncRNA ID vvi-miR169v
Species Vitis vinifera
Class miRNA
Genome position chr11:16468025-16468120 [+]
Reference genome Genoscope-20100122
Source miRBase
Length 21
Mature sequence(if miRNA) 12 - AAGCCAAGGAUGAAUUGCCGG - 32
Stem-loop(if miRNA)       --G    A         -           - G   ---     A
AGGGAG   AACA AGCCAAGGA UGAAUUGCCGG C AUG   AAAGU G
||||||   |||| ||||||||| ||||||||||| | |||   ||||| G
UCUCUC   UUGU UCGGUUCUU AUUUAACGGCU G UAC   UUUCG C
      GGG    A         U           A G   CUG     A
Stem-loop sequence AGGGAGGAACAAAGCCAAGGAUGAAUUGCCGGCGAUGAAAGUAGGCAGCUUUGUCCAUGGAUCGGCAAUUUAUUUCUUGGCUAUGUUGGGCUCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
FQ382079.1
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  =*|||||||||||||||||||
targets:1362   UGGGCAAUUCAUCCUUGGCUU   1382

0.0 Vitis vinifera clone SS0ABG72YO12 NA coding protein psRNATarget
XM_010657843.2
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  =*|||||||||||||||||||
targets:1295   UGGGCAAUUCAUCCUUGGCUU   1315

0.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-4 (LOC100249054), transcript variant X7, mRNA NA coding protein psRNATarget
XM_010657845.2
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  =*|||||||||||||||||||
targets:1298   UGGGCAAUUCAUCCUUGGCUU   1318

0.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-4 (LOC100249054), transcript variant X9, mRNA NA coding protein psRNATarget
XM_010657840.2
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  =*|||||||||||||||||||
targets:1341   UGGGCAAUUCAUCCUUGGCUU   1361

0.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-4 (LOC100249054), transcript variant X5, mRNA NA coding protein psRNATarget
XM_010657844.2
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  =*|||||||||||||||||||
targets:1377   UGGGCAAUUCAUCCUUGGCUU   1397

0.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-4 (LOC100249054), transcript variant X8, mRNA NA coding protein psRNATarget
XM_002278405.4
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  =*|||||||||||||||||||
targets:1395   UGGGCAAUUCAUCCUUGGCUU   1415

0.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-4 (LOC100249054), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010657842.2
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  =*|||||||||||||||||||
targets:1443   UGGGCAAUUCAUCCUUGGCUU   1463

0.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-4 (LOC100249054), transcript variant X6, mRNA NA coding protein psRNATarget
XM_010657835.2
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  =*|||||||||||||||||||
targets:1497   UGGGCAAUUCAUCCUUGGCUU   1517

0.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-4 (LOC100249054), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010657837.2
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  =*|||||||||||||||||||
targets:1501   UGGGCAAUUCAUCCUUGGCUU   1521

0.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-4 (LOC100249054), transcript variant X3, mRNA NA coding protein psRNATarget
XM_010657838.2
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  =*|||||||||||||||||||
targets:1527   UGGGCAAUUCAUCCUUGGCUU   1547

0.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-4 (LOC100249054), transcript variant X4, mRNA NA coding protein psRNATarget
KA146519.1
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  |||||||*||||||||||||*
targets:5   CCGGCAAGUCAUCCUUGGCUG   25

2.0 TSA: Vitis vinifera Locus_47228_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget
XM_019221448.1
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  *=||=|||||||||||||||*
targets:1375   AUGGUAAUUCAUCCUUGGCUC   1395

2.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010654961.2
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  *=||=|||||||||||||||*
targets:1394   AUGGUAAUUCAUCCUUGGCUC   1414

2.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X3, mRNA NA coding protein psRNATarget
XM_002263757.3
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  *=||=|||||||||||||||*
targets:1458   AUGGUAAUUCAUCCUUGGCUC   1478

2.0 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X1, mRNA NA coding protein psRNATarget
XM_002282742.4
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  *||||||*||||=||||||||
targets:1292   GCGGCAAAUCAUUCUUGGCUU   1312

2.5 PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-1 (LOC100251945), mRNA NA coding protein psRNATarget
FQ379011.1
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  |*|||||*||||=||||||||
targets:1564   CAGGCAAAUCAUUCUUGGCUU   1584

2.5 Vitis vinifera clone SS0AEB11YL19 NA coding protein psRNATarget
KA169395.1
ncRNA:21   GGCCGUUAAGUAGGAACCGAA   1
  |*|||||*||||=||||||||
targets:1530   CAGGCAAAUCAUUCUUGGCUU   1550

2.5 TSA: Vitis vinifera Locus_2427_Transcript_9/10_Confidence_0.606.Vivi mRNA sequence NA coding protein psRNATarget

Reference

1 PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla";
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P;
Nature. 449:463-467(2007).
2 PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera";
Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS;
BMC Genomics. 10:558(2009).
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