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BaseInfo

ncRNA ID	vvi-miR169u
Species	Vitis vinifera
Class	miRNA
Genome position	chr11:16409401-16409510 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UGAGUCAAGGAUGACUUGCCG - 31
Stem-loop(if miRNA)	--     G    U        GAU         -UU      UU  A     G AC   AGGGU GAAU GAGUCAAG   GACUUGCCG   AUAUAU  GC GAAGG C  G   ||||| |||| ||||||||   |||||||||   ||||||  || ||||| |  C   UCCCG UUUG CUCAGUUC   UUGAACGGC   UGUGUA  CG UUUCC G  A UC     G    U        -AG         CAU      -U  A     G GG
Stem-loop sequence	AGGGUGGAAUUGAGUCAAGGAUGACUUGCCGUUAUAUAUUUGCAGAAGGGCACGCAGGGGCCUUUAGCUAUGUGUUACCGGCAAGUUGACUUGACUCUGUUUGGCCCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA148814.1	ncRNA:21   GCCGUUCAGUAGGAACUGAGU   1   |*|||||||||||||||*||= targets:1224   CUGCAAGUCAUCCUUGAGUCG   1244 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_94_Transcript_94/196_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA169111.1	ncRNA:21   GCCGUUCAGUAGGAACUGAGU   1   |*|||||*|*||||||||||| targets:5989   CAGCAAGCCUUCCUUGACUCA   6009 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_4246_Transcript_18/23_Confidence_0.195.Vivi mRNA sequence	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).

2

PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009).