| ncRNA ID | vvi-miR169b |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr11:16265437-16265541 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - UGAGCCAAGGAUGGCUUGCCG - 31 |
| Stem-loop(if miRNA) |
--- U U - C -C GGGGUCGAAU GAGCCAAGGAUGGCU GCCGU CAU UGCAG AAGAGUUG |||||||||| ||||||||||||||| ||||| ||| ||||| |||||||G UCCCGGUUUA CUCGGUUCCUACUGA UGGCA GUG GUGUC UUUUCAGA UCU - U C C AA |
| Stem-loop sequence | GGGGUCGAAUUGAGCCAAGGAUGGCUUGCCGUCAUCUGCAGCAAGAGUUGGAGACUUUUAACUGUGCGUGCACGGUUAGUCAUCCUUGGCUCAUUUGGCCCUUCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_002275525.4 |
|
2.0 | PREDICTED: Vitis vinifera actin-related protein 4 (LOC100266467), mRNA | NA | coding protein | psRNATarget | |||||||||
| FQ390592.1 |
|
2.0 | Vitis vinifera clone SS0AEB17YE08 | NA | coding protein | psRNATarget | |||||||||
| FQ380555.1 |
|
2.0 | Vitis vinifera clone SS0ACG4YL23 | NA | coding protein | psRNATarget | |||||||||
| XM_002263757.3 |
|
3.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010654961.2 |
|
3.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019221448.1 |
|
3.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X2, mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |