Search result

BaseInfo

ncRNA ID	vvi-miR169i
Species	Vitis vinifera
Class	miRNA
Genome position	chr11:16158014-16158118 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	12 - GAGCCAAGGAUGACUGGCCGU - 32
Stem-loop(if miRNA)	---A    GG  UU   C  A       UG     -   UUU        UAUU     GGGU  AA  GAG CA GGAUGAC  GCCGU CAU   UCAGUUGG    U     ||||  ||  ||| || |||||||  ||||| |||   ||||||||    G     CUCG  UU  CUC GU CCUAUUG  CGGCA GUA   GGUCAAUU    A UCUC    -A  UC   U  C       GU     C   -CU        UCGG
Stem-loop sequence	AGGGUGGAAUUGAGCCAAGGAUGACUGGCCGUCAUUUUUCAGUUGGUAUUUGAGGCUUUAACUGGUCAUGCACGGCUGGUUAUCCCUGUCUCCUUUAGCUCCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA146519.1	ncRNA:21   UGCCGGUCAGUAGGAACCGAG   1   *||||*||||||||||||||* targets:5   CCGGCAAGUCAUCCUUGGCUG   25 Target Full Sequence	2.0	TSA: Vitis vinifera Locus_47228_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002263757.3	ncRNA:21   UGCCGGUCAGUAGGAACCGAG   1   |=||=*|*||||||||||||| targets:1458   AUGGUAAUUCAUCCUUGGCUC   1478 Target Full Sequence	3.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010654961.2	ncRNA:21   UGCCGGUCAGUAGGAACCGAG   1   |=||=*|*||||||||||||| targets:1394   AUGGUAAUUCAUCCUUGGCUC   1414 Target Full Sequence	3.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019221448.1	ncRNA:21   UGCCGGUCAGUAGGAACCGAG   1   |=||=*|*||||||||||||| targets:1375   AUGGUAAUUCAUCCUUGGCUC   1395 Target Full Sequence	3.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X2, mRNA	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).

2

PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009).