| ncRNA ID | vvi-miR169d |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr11:16106486-16106605 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - CAGCCAAGAAUGAUUUGCCGG - 31 |
| Stem-loop(if miRNA) |
-- G C A UG AA - - AAGAGAAGA U GAGU GAAUG AGCCAAG A AUUUGCCGG UUUAU AUAUA GUGAG GGC A |||| ||||| ||||||| | ||||||||| ||||| ||||| ||||| ||| U CUUA UUUAC UCGGUUC U UGAACGGUC AAGUG UAUAU CACUU UCG A CU G A C GU CC A A --------- G |
| Stem-loop sequence | GAGUGGAAUGCAGCCAAGAAUGAUUUGCCGGAAUUUAUAUAUAGUGAGAAGAGAAGAGGCUAUAGGCUUUCACAUAUAUAGUGAACCCUGGCAAGUUGUCCUUGGCUACAUUUGAUUCUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_002282742.4 |
|
1.0 | PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-1 (LOC100251945), mRNA | NA | coding protein | psRNATarget | |||||||||
| FQ379011.1 |
|
1.0 | Vitis vinifera clone SS0AEB11YL19 | NA | coding protein | psRNATarget | |||||||||
| KA169395.1 |
|
1.0 | TSA: Vitis vinifera Locus_2427_Transcript_9/10_Confidence_0.606.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA146519.1 |
|
2.5 | TSA: Vitis vinifera Locus_47228_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| FQ393636.1 |
|
3.0 | Vitis vinifera clone SS0AFA25YA12 | NA | coding protein | psRNATarget | |||||||||
| XM_019224952.1 |
|
3.0 | PREDICTED: Vitis vinifera WD repeat-containing protein 48 (LOC100248769), transcript variant X5, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019224951.1 |
|
3.0 | PREDICTED: Vitis vinifera WD repeat-containing protein 48 (LOC100248769), transcript variant X4, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019224950.1 |
|
3.0 | PREDICTED: Vitis vinifera WD repeat-containing protein 48 (LOC100248769), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019224949.1 |
|
3.0 | PREDICTED: Vitis vinifera WD repeat-containing protein 48 (LOC100248769), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019224948.1 |
|
3.0 | PREDICTED: Vitis vinifera WD repeat-containing protein 48 (LOC100248769), transcript variant X1, mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |