| ncRNA ID | vvi-miR319e |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr11:4317224-4317330 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 76 - UUUGGACUGAAGGGAGCUCCU - 96 |
| Stem-loop(if miRNA) |
--U C A G C CUCCAUC - AAGA G AGAA UGGGGGUUCCUUU CAG CCAAAACAA GC UGAAG U | |||| ||||||||||||| ||| ||||||||| || ||||| G C UCUU AUCCUCGAGGGAA GUC GGUUUUGUU CG ACUUC A UCU U G - A ----CCU U AAGU |
| Stem-loop sequence | UGCAGAAAUGGGGGUUCCUUUGCAGCCCAAAACAACUCCAUCGCUGAAGAAGAUGAUGAACUUCAUGCUCCUUGUUUUGGACUGAAGGGAGCUCCUAGUUCUUCUCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KA139082.1 |
|
0.0 | TSA: Vitis vinifera Locus_12971_Transcript_1/9_Confidence_0.250.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA139083.1 |
|
0.0 | TSA: Vitis vinifera Locus_12971_Transcript_2/9_Confidence_0.583.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KA139084.1 |
|
0.0 | TSA: Vitis vinifera Locus_12971_Transcript_4/9_Confidence_0.667.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| KX639825.1 |
|
2.5 | UNVERIFIED: Vitis vinifera GAMYB-like mRNA, complete sequence | NA | coding protein | psRNATarget | |||||||||
| XM_019217706.1 |
|
2.5 | PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X7, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019217705.1 |
|
2.5 | PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X6, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_019217704.1 |
|
2.5 | PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X5, mRNA | NA | coding protein | psRNATarget | |||||||||
| KA143670.1 |
|
2.5 | TSA: Vitis vinifera Locus_3605_Transcript_9/9_Confidence_0.444.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_010647229.2 |
|
2.5 | PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X4, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010647226.2 |
|
2.5 | PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X3, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_002275810.4 |
|
2.5 | PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_010647228.2 |
|
2.5 | PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X2, mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |