| ncRNA ID | vvi-miR477a |
| Species | Vitis vinifera |
| Class | miRNA |
| Genome position | chr1:22740261-22740354 [+] |
| Reference genome | Genoscope-20100122 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - AUCUCCCUCAAAGGCUUCCAA - 31 |
| Stem-loop(if miRNA) |
--G GU UC AAGG U G GAU AAGUU CAA UCCCUCA CUUCCAAUUUUCC G CU U ||||| ||| ||||||| ||||||||||||| | || UUCGA GUU AGGGGGU GAAGGUUGAAAGG U GA A CCA AG CC GACA U G ACU |
| Stem-loop sequence | GAAGUUGUCAAUCUCCCUCAAAGGCUUCCAAUUUUCCUGGCUGAUUAUCAAGGUUGGAAAGUUGGAAGACAGUGGGGGACCUUGGAAGCUUACC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_002263004.1 |
|
1.0 | PREDICTED: Vitis vinifera DELLA protein GAI (LOC100263271), mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_002267502.3 |
|
1.0 | PREDICTED: Vitis vinifera scarecrow-like protein 21 (LOC100256348), mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_003635593.3 |
|
2.5 | PREDICTED: Vitis vinifera U-box domain-containing protein 8 (LOC100852694), mRNA | NA | coding protein | psRNATarget | |||||||||
| KA140020.1 |
|
2.5 | TSA: Vitis vinifera Locus_9760_Transcript_4/9_Confidence_0.286.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| XM_002263224.3 |
|
3.0 | PREDICTED: Vitis vinifera uncharacterized LOC100245789 (LOC100245789), transcript variant X2, mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:17721507
"The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007). |
| 2 | PMID:19939267
"High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009). |