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BaseInfo

ncRNA ID	vvi-miR169y
Species	Vitis vinifera
Class	miRNA
Genome position	chr1:22233573-22233820 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UAGCGAAGGAUGACUUGCCUA - 31
Stem-loop(if miRNA)	--C  UG  U   A  G     U        UAC    U C   -     UCAAAAUA       -----    -UAC   U   CAAAUGAUUCAAGAAACAAAAGAAAAGAAAGGCCAUGGCAGCCAUCCA    GU  UU GGU GC AAGGA GACUUGCC   AGCC C UUA AGGUU        CCGAGCU     UGUC    CUU GAU                                                U    ||  || ||| || ||||| ||||||||   |||| | ||| |||||        |||||||     ||||    ||| |||    CG  AG CCA CG UUCCU CUGAACGG   UUGG G AAU UCUAA        GGUUCGA     ACAG    AGU AAG                                                C CUC  GU  U   -  G     -        UAU    U U   A     --------       UUAUC    CACA   -   AGUUCUUACUGAGGUUAAAGAUAUCUUGUACUAAGAGUACAACUGAGA
Stem-loop sequence	CGUUGUUUGGUAGCGAAGGAUGACUUGCCUACAGCCUCCUUAAGGUUUCAAAAUACCGAGCUUGUCUACCUUUGAUCAAAUGAUUCAAGAAACAAAAGAAAAGAAAGGCCAUGGCAGCCAUCCAUCAGAGUCAACAUGAGAAUCAUGUUCUAUAGAAAUUGGAGUCAUUCUUGAGAAUGAACACGACACUAUUAGCUUGGAAUCUAUAAUGUGGUUUAUGGCAAGUCUCCUUGGCACCUGAUGGCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA146519.1	ncRNA:21   AUCCGUUCAGUAGGAAGCGAU   1   **||||||||||||||*|||= targets:5   CCGGCAAGUCAUCCUUGGCUG   25 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_47228_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).

2

PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009).