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BaseInfo

ncRNA ID	vvi-miR169f
Species	Vitis vinifera
Class	miRNA
Genome position	chr1:12404208-12404391 [+]
Reference genome	Genoscope-20100122
Source	miRBase
Length	21
Mature sequence(if miRNA)	13 - CAGCCAAGGAUGACUUGCCGA - 33
Stem-loop(if miRNA)	----    -U    GUGC       G UG       -GAAAAUAAU     - G     UAAUGUGCUUCUCCAGUUUCUAUUGCAAUUUAUGCAU     GAUA  UAUG    AGCCAAG A  ACUUGCC          UUGCU C AUCGU                                     A     ||||  ||||    ||||||| |  |||||||          ||||| | |||||                                     G     CUAU  GUAC    UCGGUUU U  UGAACGG          AGGAG C AGUUA                                     G UACU    UU    ---A       G GU       GUAAUAACUA     U -     UAGACUUAAUUGUUCGAUAUUUCCUAUAUAUAUAACG
Stem-loop sequence	GAUAUUAUGGUGCAGCCAAGGAUGACUUGCCGAAAAUAAUUUGCUCGAUCGUUAAUGUGCUUCUCCAGUUUCUAUUGCAAUUUAUGCAUAGGGCAAUAUAUAUAUCCUUUAUAGCUUGUUAAUUCAGAUAUUGACUGAGGAAUCAAUAAUGGGCAAGUUGUGUUUGGCUACAUGUUUAUCUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA146519.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *|||||||||||||||||||| targets:5   CCGGCAAGUCAUCCUUGGCUG   25 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_47228_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010656181.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||| targets:804   UUGGAAAGUCAUCCUUGGCUG   824 Target Full Sequence	1.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X5, mRNA	NA	coding protein	psRNATarget
KA170941.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||| targets:974   UUGGAAAGUCAUCCUUGGCUG   994 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_10060_Transcript_1/3_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010656180.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||| targets:972   UUGGAAAGUCAUCCUUGGCUG   992 Target Full Sequence	1.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X4, mRNA	NA	coding protein	psRNATarget
KA170942.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||| targets:1029   UUGGAAAGUCAUCCUUGGCUG   1049 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_10060_Transcript_2/3_Confidence_0.400.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002274422.3	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||| targets:1407   UUGGAAAGUCAUCCUUGGCUG   1427 Target Full Sequence	1.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KA170940.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||| targets:1516   UUGGAAAGUCAUCCUUGGCUG   1536 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_10060_Transcript_3/3_Confidence_0.600.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010656177.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||| targets:1523   UUGGAAAGUCAUCCUUGGCUG   1543 Target Full Sequence	1.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010656179.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   |=||*|||||||||||||||| targets:2189   UUGGAAAGUCAUCCUUGGCUG   2209 Target Full Sequence	1.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-3 (LOC100249800), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019221448.1	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=||=||*||||||||||||* targets:1375   AUGGUAAUUCAUCCUUGGCUC   1395 Target Full Sequence	3.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010654961.2	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=||=||*||||||||||||* targets:1394   AUGGUAAUUCAUCCUUGGCUC   1414 Target Full Sequence	3.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_002263757.3	ncRNA:21   AGCCGUUCAGUAGGAACCGAC   1   *=||=||*||||||||||||* targets:1458   AUGGUAAUUCAUCCUUGGCUC   1478 Target Full Sequence	3.0	PREDICTED: Vitis vinifera nuclear transcription factor Y subunit A-10 (LOC100255650), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1

PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"; Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quetier F, Wincker P; Nature. 449:463-467(2007).

2

PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"; Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS; BMC Genomics. 10:558(2009).