Search result

BaseInfo

ncRNA ID	rco-miR162
Species	Ricinus communis
Class	miRNA
Genome position	30174:2654842-2654942 [+]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	76 - UCGAUAAACCUCUGCAUCCAG - 96
Stem-loop(if miRNA)	--UCA     G    C    C       ---------------U    CUGGAAGAUU      CUGGA GCAG GGUU AUCGAUC                CUUC          U      ||||| |||| |||| |||||||                ||||      GACCU CGUC CCAA UAGCUAG                AAAA          U UUCGC     A    U    A       CUAAGUACGCAAAAUA    CAAAGUGUUG
Stem-loop sequence	UCACUGGAGGCAGCGGUUCAUCGAUCUCUUCCUGGAAGAUUUUGUUGUGAAACAAAAAUAAAACGCAUGAAUCGAUCGAUAAACCUCUGCAUCCAGCGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002515051.2	ncRNA:21   GACCUACGUCUCCA-AAUAGCU   1   ||||||||||||||-||||||| targets:3955   CUGGAUGCAGAGGUGUUAUCGA   3976 Target Full Sequence	3.0	PREDICTED: Ricinus communis endoribonuclease Dicer homolog 1 (LOC8270769), mRNA	endoribonuclease Dicer homolog 1(LOC8270769)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).