Search result

BaseInfo

ncRNA ID	rco-miR399a
Species	Ricinus communis
Class	miRNA
Genome position	30147:464925-465017 [+]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	68 - UGCCAAAGGAGAGUUGCCCUG - 88
Stem-loop(if miRNA)	-- UG       C     GC           ----AG    CAC  GC   U  UAGGGCA CUCUU  UUGGCAGGUAA      GGGA   UA  U   |  ||||||| |||||  |||||||||||      ||||   ||  A   A  GUCCCGU GAGAG  AACCGUUCGUU      CCCU   AU  G UC GU       U     GA           CAAUAA    ACA  AC
Stem-loop sequence	UUGUAGGGCACCUCUUGCUUGGCAGGUAAAGGGGACACUAGCUAGCAUAACAUCCCAAUAACUUGCUUGCCAAAGGAGAGUUGCCCUGUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015719136.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =|||||||*|||||||||||| targets:1100   UAGGGCAAAUCUCCUUUGGCA   1120 Target Full Sequence	1.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1007   CUGGGCAAAUCUCCUUUGGCA   1027 Target Full Sequence	1.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:739   UUGGGCAAAUCUCCUUUGGCA   759 Target Full Sequence	1.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =|||||||*|||||||||||| targets:1099   UAGGGCAAAUCUCCUUUGGCA   1119 Target Full Sequence	1.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1006   CUGGGCAAAUCUCCUUUGGCA   1026 Target Full Sequence	1.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GUCCCGUUGAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:738   UUGGGCAAAUCUCCUUUGGCA   758 Target Full Sequence	1.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).