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BaseInfo

ncRNA ID	rco-miR399d
Species	Ricinus communis
Class	miRNA
Genome position	30147:461879-461981 [+]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	78 - UGCCAAAGGAGAGCUGCCCUG - 98
Stem-loop(if miRNA)	--          U     GC         ---AAU   A    G   A    A   UCGUAGGGCA CUCUC  UUGGCAGGC      GAU UGAA UGA GCUA A   |||||||||| |||||  |||||||||      ||| |||| ||| |||| U   AGUGUCCCGU GAGAG  AACCGUUCG      CUA GUUU AUU CGAU U UC          C     GA         GUAACC   -    G   A    U
Stem-loop sequence	UCGUAGGGCAUCUCUCGCUUGGCAGGCAAUGAUAUGAAGUGAAGCUAAAUUUUAGCAUUAGUUUGAUCCCAAUGGCUUGCCAAAGGAGAGCUGCCCUGUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015719136.1	ncRNA:21   GUCCCGUCGAGAGGAAACCGU   1   =||||||**|||||||||||| targets:1100   UAGGGCAAAUCUCCUUUGGCA   1120 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   GUCCCGUCGAGAGGAAACCGU   1   |*|||||**|||||||||||| targets:1007   CUGGGCAAAUCUCCUUUGGCA   1027 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   GUCCCGUCGAGAGGAAACCGU   1   =*|||||**|||||||||||| targets:739   UUGGGCAAAUCUCCUUUGGCA   759 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GUCCCGUCGAGAGGAAACCGU   1   =||||||**|||||||||||| targets:1099   UAGGGCAAAUCUCCUUUGGCA   1119 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GUCCCGUCGAGAGGAAACCGU   1   |*|||||**|||||||||||| targets:1006   CUGGGCAAAUCUCCUUUGGCA   1026 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GUCCCGUCGAGAGGAAACCGU   1   =*|||||**|||||||||||| targets:738   UUGGGCAAAUCUCCUUUGGCA   758 Target Full Sequence	2.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).