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BaseInfo

ncRNA ID	rco-miR166a
Species	Ricinus communis
Class	miRNA
Genome position	30089:790389-790537 [-]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - UCGGACCAGGCUUCAUUCCCC - 26
Stem-loop(if miRNA)	--           UU         A   CCUA    ----U     UG    ---   UUCAUUCAAUAUACUGAAAA   UAAGGGGAAUG  GUCUGGUUC AGG    CCUA     UGAUC  UUUC   AGU                    A   |||||||||||  ||||||||| |||    ||||     |||||  ||||   |||                    U   AUUCCCCUUAC  CGGACCAGG UCC    GGAU     ACUAG  UUAG   GUG                    C UA           UU         C   UCUA    UCUUU     -U    CUG   UCCUAUCAAAGGGUAUAUGU
Stem-loop sequence	UAAGGGGAAUGUUGUCUGGUUCAAGGCCUACCUAUUGAUCUGUUUCAGUUUCAUUCAAUAUACUGAAAAAUCUGUAUAUGGGAAACUAUCCUGUGGUCGAUUUGAUCAUUUCUUAGGAUCUCCUCGGACCAGGCUUCAUUCCCCUUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002515931.2	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1744   CUGGAAUGAAGCCUGGUCCGG   1764 Target Full Sequence	1.0	PREDICTED: Ricinus communis homeobox-leucine zipper protein ATHB-15 (LOC8273792), mRNA	homeobox-leucine zipper protein ATHB-15(LOC8273792)	coding protein	psRNATarget
XM_015717688.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:804   CUGGGAUGAAGCCUGGUCCGG   824 Target Full Sequence	2.0	PREDICTED: Ricinus communis homeobox-leucine zipper protein ATHB-8 (LOC8275667), mRNA	homeobox-leucine zipper protein ATHB-8(LOC8275667)	coding protein	psRNATarget
XM_002529900.2	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1273   CUGGGAUGAAGCCUGGUCCGG   1293 Target Full Sequence	2.0	PREDICTED: Ricinus communis homeobox-leucine zipper protein REVOLUTA (LOC8266275), mRNA	homeobox-leucine zipper protein REVOLUTA(LOC8266275)	coding protein	psRNATarget
XM_015721762.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1786   UUGGGAUGAAGCCUGGUCCGG   1806 Target Full Sequence	2.0	PREDICTED: Ricinus communis homeobox-leucine zipper protein ATHB-14 (LOC8265527), mRNA	homeobox-leucine zipper protein ATHB-14(LOC8265527)	coding protein	psRNATarget
XM_015723880.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||=|||||||= targets:736   AAGGAAUGAAGCUUGGUCCGG   756 Target Full Sequence	2.5	PREDICTED: Ricinus communis uncharacterized protein DDB_G0288629 (LOC8277364), mRNA	uncharacterized protein DDB_G0288629(LOC8277364)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).