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BaseInfo

ncRNA ID	rco-miR399e
Species	Ricinus communis
Class	miRNA
Genome position	30026:152225-152332 [-]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - UGCCAAAGGAGAUUUGCCCAG - 26
Stem-loop(if miRNA)	--UUACA      AU      A        UA  -    -     -C    A  UAA        GGGCAA  AUCUCC UUGGCAGG  GC CACU UUAGA  AUGC UU   A        ||||||  |||||| ||||||||  || |||| |||||  |||| ||        CCCGUU  UAGAGG AACCGUCU  CG GUGA AAUUU  UACG AG   U UUAACGA      --      A        UC  U    C     AU    -  UUU
Stem-loop sequence	UUACAGGGCAAAUAUCUCCAUUGGCAGGUAGCCACUUUAGACAUGCAUUUAAAUUUUGAGCAUUAUUUAACAGUGUGCCUUCUGCCAAAGGAGAUUUGCCCAGCAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015719136.1	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   ||||||||||||||||||||| targets:1007   CUGGGCAAAUCUCCUUUGGCA   1027 Target Full Sequence	0.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   =|||||||||||||||||||| targets:739   UUGGGCAAAUCUCCUUUGGCA   759 Target Full Sequence	0.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   ||||||||||||||||||||| targets:1006   CUGGGCAAAUCUCCUUUGGCA   1026 Target Full Sequence	0.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   =|||||||||||||||||||| targets:738   UUGGGCAAAUCUCCUUUGGCA   758 Target Full Sequence	0.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   |*||||||||||=|||||||| targets:648   CAGGGCAAAUCUUCUUUGGCA   668 Target Full Sequence	1.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GACCCGUUUAGAGGAAACCGU   1   |*||||||||||=|||||||| targets:647   CAGGGCAAAUCUUCUUUGGCA   667 Target Full Sequence	1.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   GA-CCCGUUUAGAGGAAACCGU   1   ||-||||||||||||||||||| targets:1099   CUAGGGCAAAUCUCCUUUGGCA   1120 Target Full Sequence	2.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GA-CCCGUUUAGAGGAAACCGU   1   ||-||||||||||||||||||| targets:1098   CUAGGGCAAAUCUCCUUUGGCA   1119 Target Full Sequence	2.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).