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BaseInfo

ncRNA ID	rco-miR399c
Species	Ricinus communis
Class	miRNA
Genome position	30026:138457-138552 [-]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - UGCCAAAGGAGAUUUGCCCGG - 26
Stem-loop(if miRNA)	--UUACA       AC    A        C   CAG  UAA    U    C        GGGCAAA  CUUC UUGGCAUG UGC   AC   GAUG GGGA G        |||||||  |||| |||||||| |||   ||   |||| ||||        CCCGUUU  GAGG AACCGUAC ACG   UG   CUAU CCUU C AUAGCGG       -A    A        U   ---  -UG    -    A
Stem-loop sequence	UUACAGGGCAAAACCUUCAUUGGCAUGCUGCCAGACUAAGAUGUGGGACGCAUUCCUAUCGUGUGCAUCAUGCCAAAGGAGAUUUGCCCGGCGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015719136.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   |=||||||||||||||||||| targets:1007   CUGGGCAAAUCUCCUUUGGCA   1027 Target Full Sequence	0.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   ==||||||||||||||||||| targets:739   UUGGGCAAAUCUCCUUUGGCA   759 Target Full Sequence	0.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   =*||||||||||||||||||| targets:1100   UAGGGCAAAUCUCCUUUGGCA   1120 Target Full Sequence	0.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   |=||||||||||||||||||| targets:1006   CUGGGCAAAUCUCCUUUGGCA   1026 Target Full Sequence	0.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   ==||||||||||||||||||| targets:738   UUGGGCAAAUCUCCUUUGGCA   758 Target Full Sequence	0.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   =*||||||||||||||||||| targets:1099   UAGGGCAAAUCUCCUUUGGCA   1119 Target Full Sequence	0.0	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_015719136.1	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   |*||||||||||=|||||||| targets:648   CAGGGCAAAUCUUCUUUGGCA   668 Target Full Sequence	1.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget
XM_002519020.2	ncRNA:21   GGCCCGUUUAGAGGAAACCGU   1   |*||||||||||=|||||||| targets:647   CAGGGCAAAUCUUCUUUGGCA   667 Target Full Sequence	1.5	PREDICTED: Ricinus communis probable ubiquitin-conjugating enzyme E2 24 (LOC8279507), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC8279507)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).