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BaseInfo

ncRNA ID	rco-miR397
Species	Ricinus communis
Class	miRNA
Genome position	29933:359596-359752 [-]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	132 - UCAUUGAGUGCAGCGUUGAUG - 152
Stem-loop(if miRNA)	--      C                A    U  C  U   -U  CAUAUUUCUGUUGGUUAAUUCAUUACCAAUAUCCCU   AAACAU AUUGAGUGCAGCGUUG UGAA UC CC ACA  GA                                    U   |||||| |||||||||||||||| |||| || || |||  ||   UUUGUA UAACUUACGUCGCGAC ACUU AG UA GGU  UG                                    C UU      C                C    U  -  -   UU  GUAGAUAAGGGUUUUUCCAAAUGAAGAAAAAAAUUU
Stem-loop sequence	AAACAUCAUUGAGUGCAGCGUUGAUGAAUUCCCCUACAUGACAUAUUUCUGUUGGUUAAUUCAUUACCAAUAUCCCUUCUUUAAAAAAAGAAGUAAACCUUUUUGGGAAUAGAUGGUUUUGGAUGAUUUCACCAGCGCUGCAUUCAAUCAUGUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002533848.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||=|||||||||||||| targets:774   AAUCAAUGCUGCACUCAAUGA   794 Target Full Sequence	1.0	PREDICTED: Ricinus communis laccase-4 (LOC8263548), mRNA	laccase-4(LOC8263548)	coding protein	psRNATarget
XM_002520379.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *=|||||||||||||=||||| targets:752   AGUCAACGCUGCACUUAAUGA   772 Target Full Sequence	1.5	PREDICTED: Ricinus communis laccase-4 (LOC8284140), mRNA	laccase-4(LOC8284140)	coding protein	psRNATarget
XM_002531519.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||||||||||||||*|| targets:696   AAUCAACGCUGCACUCAACGA   716 Target Full Sequence	1.5	PREDICTED: Ricinus communis laccase-17 (LOC8258389), mRNA	laccase-17(LOC8258389)	coding protein	psRNATarget
XM_002531515.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *||||||||*||||||||||| targets:675   GAUCAACGCAGCACUCAAUGA   695 Target Full Sequence	1.5	PREDICTED: Ricinus communis laccase-17 (LOC8258382), mRNA	laccase-17(LOC8258382)	coding protein	psRNATarget
XM_002531778.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||||||||||||||*|| targets:796   GAUCAACGCUGCACUCAACGA   816 Target Full Sequence	1.5	PREDICTED: Ricinus communis laccase-17 (LOC8271713), mRNA	laccase-17(LOC8271713)	coding protein	psRNATarget
XM_002519483.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   =||*||=|||||||||||||| targets:675   UAUAAAUGCUGCACUCAAUGA   695 Target Full Sequence	2.0	PREDICTED: Ricinus communis laccase-11 (LOC8284522), mRNA	laccase-11(LOC8284522)	coding protein	psRNATarget
XM_002527842.1	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   ||||||=||||||||||||*| targets:585   CAUCAAUGCUGCACUCAAUAA   605 Target Full Sequence	2.5	PREDICTED: Ricinus communis laccase-7 (LOC8273465), mRNA	laccase-7(LOC8273465)	coding protein	psRNATarget
XM_002520186.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||=|||||||||||*|| targets:724   GAUCAAUGCUGCACUCAACGA   744 Target Full Sequence	2.5	PREDICTED: Ricinus communis laccase-17 (LOC8270400), mRNA	laccase-17(LOC8270400)	coding protein	psRNATarget
XM_002512869.2	ncRNA:21   GUAGUUGCGACGUGAGUUACU   1   *|||||=|||||||||||*|| targets:1083   AAUCAAUGCUGCACUCAACGA   1103 Target Full Sequence	2.5	PREDICTED: Ricinus communis laccase-11 (LOC8285325), mRNA	laccase-11(LOC8285325)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).