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BaseInfo

ncRNA ID	rco-miR396
Species	Ricinus communis
Class	miRNA
Genome position	29841:920136-920259 [+]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - UUCCACAGCUUUCUUGAACUU - 26
Stem-loop(if miRNA)	--  C                       C    UCUUCUUCUUCU   UCUUAGAUUUCUUUCUCAU   UG UUUUCCACAGCUUUCUUGAACUU UUCU            UCU                   U   || ||||||||||||||||||||||| ||||            |||                   G   AC AGAGGGUGUCGAAAGAACUUGAA AAGA            ACG                   C GU  A                       U    -----------C   GUGUAGUUCUUUCUAUAUC
Stem-loop sequence	UGCUUUUCCACAGCUUUCUUGAACUUCUUCUUCUUCUUCUUCUUCUUCUUAGAUUUCUUUCUCAUUGCCUAUAUCUUUCUUGAUGUGGCACAGAAUAAGUUCAAGAAAGCUGUGGGAGAACAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002509604.2	ncRNA:21   UUCAAGUUCUUUCGA-CACCUU   1   =*|||||||||||||-|||||| targets:710   GCGUUCAAGAAAGCUUGUGGAA   731 Target Full Sequence	3.0	PREDICTED: Ricinus communis growth-regulating factor 10 (LOC8272466), mRNA	growth-regulating factor 10(LOC8272466)	coding protein	psRNATarget
XM_002535420.2	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:120   UCGUUCAAGAAAGCCUGUGGAA   141 Target Full Sequence	3.0	PREDICTED: Ricinus communis growth-regulating factor 6 (LOC8270073), partial mRNA	growth-regulating factor 6(LOC8270073)	coding protein	psRNATarget
XM_015728976.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:465   CCGUUCAAGAAAGCCUGUGGAA   486 Target Full Sequence	3.0	PREDICTED: Ricinus communis growth-regulating factor 9 (LOC8270659), transcript variant X3, mRNA	growth-regulating factor 9(LOC8270659)	coding protein	psRNATarget
XM_015728975.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:558   CCGUUCAAGAAAGCCUGUGGAA   579 Target Full Sequence	3.0	PREDICTED: Ricinus communis growth-regulating factor 9 (LOC8270659), transcript variant X2, mRNA	growth-regulating factor 9(LOC8270659)	coding protein	psRNATarget
XM_015728003.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:756   UCGUUCAAGAAAGCCUGUGGAA   777 Target Full Sequence	3.0	PREDICTED: Ricinus communis growth-regulating factor 2 (LOC8276073), mRNA	growth-regulating factor 2(LOC8276073)	coding protein	psRNATarget
XM_015728974.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:639   CCGUUCAAGAAAGCCUGUGGAA   660 Target Full Sequence	3.0	PREDICTED: Ricinus communis growth-regulating factor 9 (LOC8270659), transcript variant X1, mRNA	growth-regulating factor 9(LOC8270659)	coding protein	psRNATarget
XM_015718963.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:893   UCGUUCAAGAAAGCCUGUGGAA   914 Target Full Sequence	3.0	PREDICTED: Ricinus communis growth-regulating factor 8 (LOC8288854), transcript variant X2, mRNA	growth-regulating factor 8(LOC8288854)	coding protein	psRNATarget
XM_002518875.2	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:909   UCGUUCAAGAAAGCCUGUGGAA   930 Target Full Sequence	3.0	PREDICTED: Ricinus communis growth-regulating factor 8 (LOC8288854), transcript variant X1, mRNA	growth-regulating factor 8(LOC8288854)	coding protein	psRNATarget
XM_002521886.2	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:818   CCGUUCAAGAAAGCCUGUGGAA   839 Target Full Sequence	3.0	PREDICTED: Ricinus communis growth-regulating factor 7 (LOC8268175), mRNA	growth-regulating factor 7(LOC8268175)	coding protein	psRNATarget
XM_015720915.1	ncRNA:21   UUCAAGUUCUUUCG-ACACCUU   1   **||||||||||||-||||||| targets:856   UCGUUCAAGAAAGCAUGUGGAA   877 Target Full Sequence	3.0	PREDICTED: Ricinus communis growth-regulating factor 1 (LOC8265254), mRNA	growth-regulating factor 1(LOC8265254)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).