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BaseInfo

ncRNA ID	rco-miR160c
Species	Ricinus communis
Class	miRNA
Genome position	29836:175486-175579 [+]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - UGCCUGGCUCCCUGAAUGCCA - 26
Stem-loop(if miRNA)	-- UA     C         GA      UC  A    C       AC   G  UCUGC UGGCUCCCU  AUGCCA  UA GAAG UUGUCAA  A   |  ||||| |||||||||  ||||||  || |||| |||||||   C  GGACG ACUGAGGGG  UACGGU  AU CUUU AACGGUU  G UG CC     U         AG      UU  C    U       GU
Stem-loop sequence	GUAUCUGCCUGGCUCCCUGAAUGCCAUCUAAGAAGCUUGUCAAACAGUGUUGGCAAUUUUCCUAUUUGGCAUGAGGGGAGUCAUGCAGGCCCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015716078.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   ||||||*|||||||||||||| targets:1659   UGGCAUGCAGGGAGCCAGGCA   1679 Target Full Sequence	1.0	PREDICTED: Ricinus communis auxin response factor 17 (LOC8262995), transcript variant X2, mRNA	auxin response factor 17(LOC8262995)	coding protein	psRNATarget
XM_002513798.2	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   ||||||*|||||||||||||| targets:1659   UGGCAUGCAGGGAGCCAGGCA   1679 Target Full Sequence	1.0	PREDICTED: Ricinus communis auxin response factor 17 (LOC8262995), transcript variant X1, mRNA	auxin response factor 17(LOC8262995)	coding protein	psRNATarget
XM_002519485.2	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   ||||||*|||||||||||||| targets:1641   UGGCAUGCAGGGAGCCAGGCA   1661 Target Full Sequence	1.0	PREDICTED: Ricinus communis auxin response factor 18 (LOC8284524), mRNA	auxin response factor 18(LOC8284524)	coding protein	psRNATarget
XM_002529895.2	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   *|||||*|||||||||||||| targets:2084   AGGCAUACAGGGAGCCAGGCA   2104 Target Full Sequence	1.0	PREDICTED: Ricinus communis auxin response factor 18 (LOC8266270), mRNA	auxin response factor 18(LOC8266270)	coding protein	psRNATarget
XM_015719732.1	ncRNA:21   ACCGUAAGUCCCUCGGUCCGU   1   **|||*|||||*||||||||| targets:1182   AAGCAGUCAGGUAGCCAGGCA   1202 Target Full Sequence	2.5	PREDICTED: Ricinus communis serine/threonine-protein kinase TIO (LOC8283070), mRNA	serine/threonine-protein kinase TIO(LOC8283070)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).