Search result

BaseInfo

ncRNA ID rco-miR395c
Species Ricinus communis
Class miRNA
Genome position 29736:142167-142248 [+]
Reference genome TIGR0.1
Source miRBase
Length 21
Mature sequence(if miRNA) 57 - CUGAAGUGUUUGGGGGAACUC - 77
Stem-loop(if miRNA) -    -        UG         C     -U   AAAAG
 CUAG AGUUCCCU  AGCACUUCA UGGGA  GAA     G
 |||| ||||||||  ||||||||| |||||  |||     U
 GGUC UCAAGGGG  UUGUGAAGU AUCCU  CUU     C
U    C        GU         C     UC   CUGAC
Stem-loop sequence CUAGAGUUCCCUUGAGCACUUCACUGGGAUGAAAAAAGGUCCAGUCUUCCUUCCUACUGAAGUGUUUGGGGGAACUCCUGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015725247.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  ***|||||||||||||||||*
targets:368   NNNUUCCCCCAAACACUUCAA   388

2.0 PREDICTED: Ricinus communis low affinity sulfate transporter 3 (LOC8265600), mRNA low affinity sulfate transporter 3(LOC8265600) coding protein psRNATarget

Reference

1 PMID:19942686
"Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants";
Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M;
Nucleic Acids Res. 38:981-995(2010).