Search result

BaseInfo

ncRNA ID	rco-miR164d
Species	Ricinus communis
Class	miRNA
Genome position	29727:135552-135636 [-]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	60 - UGGAGAAGCAGGGCACAUGCU - 80
Stem-loop(if miRNA)	--  U         GC           U      A    AA G   CA GCUGGAGAA  AGGGCACAUGC AGAUUU UCAG  U A   || |||||||||  ||||||||||| |||||| ||||  |   GU CGACCUCUU  UUCCGUGUACG UUUAAG AGUC  A A AG  U         GU           U      -    CA A
Stem-loop sequence	CAUGCUGGAGAAGCAGGGCACAUGCUAGAUUUAUCAGAAUGAAAAACCUGAGAAUUUUGCAUGUGCCUUUGUUCUCCAGCUUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015725842.1	ncRNA:21   UCGUACACGGGACGAAGAGGU   1   ||||*|||=|||||||||||| targets:676   AGCAAGUGUCCUGCUUCUCCA   696 Target Full Sequence	2.5	PREDICTED: Ricinus communis NAC domain-containing protein 21/22 (LOC8266284), transcript variant X2, mRNA	NAC domain-containing protein 21/22(LOC8266284)	coding protein	psRNATarget
XM_002529908.2	ncRNA:21   UCGUACACGGGACGAAGAGGU   1   ||||*|||=|||||||||||| targets:682   AGCAAGUGUCCUGCUUCUCCA   702 Target Full Sequence	2.5	PREDICTED: Ricinus communis NAC domain-containing protein 21/22 (LOC8266284), transcript variant X1, mRNA	NAC domain-containing protein 21/22(LOC8266284)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).