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BaseInfo

ncRNA ID	rco-miR169c
Species	Ricinus communis
Class	miRNA
Genome position	29660:125654-125767 [-]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	89 - UGAGCCAAGGAUGACUUGCCG - 109
Stem-loop(if miRNA)	--   CCU            A         CAUAUAUAAAAUUCUUU   UCGCCAGCAAUC   GGA   GAGCCAAGGAUG CUUGCCGCG                 CUG            A   |||   |||||||||||| |||||||||                 |||            U   CUU   CUCGGUUCUUAC GAACGGUGC                 GGA            C CA   CAU            A         -----------CUUUUG   AAAGUCCGAUAG
Stem-loop sequence	GGACCUGAGCCAAGGAUGACUUGCCGCGCAUAUAUAAAAUUCUUUCUGUCGCCAGCAAUCAUCGAUAGCCUGAAAAGGGUUUUCCGUGGCAAGACAUUCUUGGCUCUACUUCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002521306.2	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   =||*||||||||||||||||| targets:1097   UGGGAAGUCAUCCUUGGCUCA   1117 Target Full Sequence	1.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3(LOC8284676)	coding protein	psRNATarget
XM_015720645.1	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   =||*||||||||||||||||| targets:1115   UGGGAAGUCAUCCUUGGCUCA   1135 Target Full Sequence	1.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3(LOC8284676)	coding protein	psRNATarget
XM_015720647.1	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   =||*||||||||||||||||| targets:1253   UGGGAAGUCAUCCUUGGCUCA   1273 Target Full Sequence	1.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3(LOC8284676)	coding protein	psRNATarget
XM_015720646.1	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   =||*||||||||||||||||| targets:1353   UGGGAAGUCAUCCUUGGCUCA   1373 Target Full Sequence	1.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3(LOC8284676)	coding protein	psRNATarget
XM_015720648.1	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   =||*||||||||||||||||| targets:1412   UGGGAAGUCAUCCUUGGCUCA   1432 Target Full Sequence	1.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3(LOC8284676)	coding protein	psRNATarget
XM_015722318.1	ncRNA:21   GCCGUUCAGUAGGAACCGAGU   1   *|||||*||||=||||||||| targets:1315   GGGCAAAUCAUUCUUGGCUCA   1335 Target Full Sequence	2.5	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-10 (LOC8259768), mRNA	nuclear transcription factor Y subunit A-10(LOC8259768)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).