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BaseInfo

ncRNA ID rco-miR156e
Species Ricinus communis
Class miRNA
Genome position 29629:52393-52487 [+]
Reference genome TIGR0.1
Source miRBase
Length 21
Mature sequence(if miRNA) 6 - UGACAGAAGAGAGAGAGCACA - 26
Stem-loop(if miRNA) --A   U           -          -A       UU    U    
   AUG UGACAGAAGAG AGAGAGCACA  CCCGGCA  AGGC AAAGA
   ||| ||||||||||| ||||||||||  |||||||  |||| ||||G
   UAC ACUGUCUUCUC UCUCUCGUGU  GGGUUGU  UCCG UUUCU
CAC   U           C          GA       -U    -    
Stem-loop sequence AAUGUUGACAGAAGAGAGAGAGCACAACCCGGCAUUAGGCUAAAGAGUCUUUGCCUUUGUUGGGAGUGUGCUCUCUCCUCUUCUGUCAUCAUCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015729064.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1313   UGUGCUCUCUCUCUUCUGUCA   1333

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X1, mRNA squamosa promoter-binding-like protein 6(LOC8264608) coding protein psRNATarget
XM_002512008.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1309   UGUGCUCUCUCUCUUCUGUCA   1329

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X4, mRNA squamosa promoter-binding-like protein 6(LOC8264608) coding protein psRNATarget
XM_015729065.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1182   UGUGCUCUCUCUCUUCUGUCA   1202

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X2, mRNA squamosa promoter-binding-like protein 6(LOC8264608) coding protein psRNATarget
XM_015729066.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1314   UGUGCUCUCUCUCUUCUGUCA   1334

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X3, mRNA squamosa promoter-binding-like protein 6(LOC8264608) coding protein psRNATarget
XM_002511111.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1326   UGUGCUCUCUCUCUUCUGUCA   1346

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X2, mRNA squamosa promoter-binding-like protein 13A(LOC8269206) coding protein psRNATarget
XM_015723461.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1298   UGUGCUCUCUCUCUUCUGUCA   1318

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X1, mRNA squamosa promoter-binding-like protein 13A(LOC8269206) coding protein psRNATarget
XM_015727314.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1061   UGUGCUCUCUCUCUUCUGUCA   1081

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 9 (LOC8277452), mRNA squamosa promoter-binding-like protein 9(LOC8277452) coding protein psRNATarget
XM_015723469.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1173   UGUGCUCUCUCUCUUCUGUCA   1193

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X3, mRNA squamosa promoter-binding-like protein 13A(LOC8269206) coding protein psRNATarget
XM_015716703.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:2237   CGUGCUCUCUCUCUUCUGUCA   2257

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 2 (LOC8286787), transcript variant X1, mRNA squamosa promoter-binding-like protein 2(LOC8286787) coding protein psRNATarget
XM_015716704.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:2001   CGUGCUCUCUCUCUUCUGUCA   2021

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 2 (LOC8286787), transcript variant X2, mRNA squamosa promoter-binding-like protein 2(LOC8286787) coding protein psRNATarget
XM_015716676.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1391   GGUGCUCUCUCUCUUCUGUCA   1411

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X1, mRNA squamosa promoter-binding-like protein 16(LOC8286773) coding protein psRNATarget
XM_015716678.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1382   GGUGCUCUCUCUCUUCUGUCA   1402

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X3, mRNA squamosa promoter-binding-like protein 16(LOC8286773) coding protein psRNATarget
XM_015716677.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1090   GGUGCUCUCUCUCUUCUGUCA   1110

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X2, mRNA squamosa promoter-binding-like protein 16(LOC8286773) coding protein psRNATarget
XM_015727577.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:808   CGUGCUCUCUCUCUUCUGUCA   828

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 7 (LOC8265833), mRNA squamosa promoter-binding-like protein 7(LOC8265833) coding protein psRNATarget
XM_002514579.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |*|||||||||||||||||||
targets:1838   UCUGCUCUCUCUCUUCUGUCA   1858

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8265059), mRNA squamosa promoter-binding-like protein 6(LOC8265059) coding protein psRNATarget
XM_002509404.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|||||||||||||||||||
targets:838   AAUGCUCUCUCUCUUCUGUCA   858

0.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 3 (LOC8258445), mRNA squamosa promoter-binding-like protein 3(LOC8258445) coding protein psRNATarget
XM_002533040.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|||||*|||||||||||||
targets:628   CAUGCUCCCUCUCUUCUGUCA   648

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 3 (LOC8266790), mRNA squamosa promoter-binding-like protein 3(LOC8266790) coding protein psRNATarget
XM_002517836.2
ncRNA:21   AC--ACGAGAGAGAGAAGACAGU   1
  ||--|||||||||||||||||||
targets:732   UGAUUGCUCUCUCUCUUCUGUCA   754

2.5 PREDICTED: Ricinus communis squamosa promoter-binding protein 1 (LOC8269152), mRNA squamosa promoter-binding protein 1(LOC8269152) coding protein psRNATarget
XM_015723323.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|*=|||||||||||||||*
targets:239   CUUUUUCUCUCUCUUCUGUCU   259

3.0 PREDICTED: Ricinus communis uncharacterized LOC8282370 (LOC8282370), transcript variant X2, mRNA uncharacterized LOC8282370(LOC8282370) coding protein psRNATarget
XM_002525658.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|*=|||||||||||||||*
targets:239   CUUUUUCUCUCUCUUCUGUCU   259

3.0 PREDICTED: Ricinus communis uncharacterized LOC8282370 (LOC8282370), transcript variant X1, mRNA uncharacterized LOC8282370(LOC8282370) coding protein psRNATarget

Reference

1 PMID:19942686
"Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants";
Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M;
Nucleic Acids Res. 38:981-995(2010).
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