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BaseInfo

ncRNA ID	rco-miR159
Species	Ricinus communis
Class	miRNA
Genome position	28318:35526-35705 [-]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	6 - UUUGGAUUGAAGGGAGCUCUA - 26
Stem-loop(if miRNA)	--GA            GA       UA        --UGAU      AUU     G     C    G UC      C     AAG     AU     GUGGAGCUCCUU  AGUCCAA  GAGGAUCU      GGGUAG   GAGCU CUGAG UAUG A  CCACAG CCUAU   CAGAG  U     ||||||||||||  |||||||  ||||||||      ||||||   ||||| ||||| |||| |  |||||| |||||   |||||  A     CAUCUCGAGGGA  UUAGGUU  UUCCUAGA      UCCAUU   UUCGA GACUC AUAC U  GGUGUU GGAUA   GUUUU  U UCUA            AG       UG        UUAUGU      -AC     G     U    G UC      C     --G     AA
Stem-loop sequence	GAGUGGAGCUCCUUGAAGUCCAAUAGAGGAUCUUGAUGGGUAGAUUGAGCUGCUGAGCUAUGGAUCCCACAGCCCUAUAAGCAGAGAUUAUAAUUUUGGAUAGGCUUGUGGCUUGCAUAUCUCAGGAGCUUCAUUACCUUGUAUUAGAUCCUUGUUUGGAUUGAAGGGAGCUCUACAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002531313.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=|||||||||||||*||||| targets:1484   UGGAGCUCCCUUCAAACCAAA   1504 Target Full Sequence	1.5	PREDICTED: Ricinus communis uncharacterized LOC8269401 (LOC8269401), mRNA	uncharacterized LOC8269401(LOC8269401)	coding protein	psRNATarget
XM_015723249.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1303   UGGAGCUCCCUUCACUCCAAU   1323 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X4, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015723250.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1316   UGGAGCUCCCUUCACUCCAAU   1336 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X5, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015723247.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1357   UGGAGCUCCCUUCACUCCAAU   1377 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X1, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_002525528.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1358   UGGAGCUCCCUUCACUCCAAU   1378 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X3, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015723248.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1422   UGGAGCUCCCUUCACUCCAAU   1442 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8276332), transcript variant X2, mRNA	transcription factor GAMYB(LOC8276332)	coding protein	psRNATarget
XM_015721816.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   |=||||||||||||*|||||* targets:1727   UGGAGCUCCCUUCACUCCAAU   1747 Target Full Sequence	2.5	PREDICTED: Ricinus communis transcription factor GAMYB (LOC8268819), mRNA	transcription factor GAMYB(LOC8268819)	coding protein	psRNATarget
XM_002529860.2	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *=|||||||||||||*||||* targets:162   AGGAGCUCCCUUCAAACCAAU   182 Target Full Sequence	2.5	PREDICTED: Ricinus communis uncharacterized LOC8276722 (LOC8276722), mRNA	uncharacterized LOC8276722(LOC8276722)	coding protein	psRNATarget
XM_015721423.1	ncRNA:21   AUCUCGAGGGAAGUUAGGUUU   1   *|||||*||||||||*||||| targets:926   GAGAGCCCCCUUCAAACCAAA   946 Target Full Sequence	2.5	PREDICTED: Ricinus communis cell wall protein RBR3 (LOC8259190), mRNA	cell wall protein RBR3(LOC8259190)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).