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BaseInfo

ncRNA ID	rco-miR169b
Species	Ricinus communis
Class	miRNA
Genome position	28226:117879-117971 [-]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	68 - CAGCCAAGGAUGACUUGCCGG - 88
Stem-loop(if miRNA)	--UAAUUC         UG         CAC   CUAUAUA   CUU         AGCCAAGGA  ACUUGCCGG   AGC       UGU   C         |||||||||  |||||||||   |||       |||   U         UCGGUUCUU  UGAACGGCC   UCG       ACA   A AUGUUACA         GU         --A   AUCGUCG   CUC
Stem-loop sequence	UAAUUCAGCCAAGGAUGACUUGCCGGCACAGCCUAUAUAUGUCUUCUACUCACAGCUGCUAGCUACCGGCAAGUUGUUCUUGGCUACAUUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002521306.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   ==||*|||||||||||||||* targets:1096   UUGGGAAGUCAUCCUUGGCUC   1116 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3(LOC8284676)	coding protein	psRNATarget
XM_015720645.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   ==||*|||||||||||||||* targets:1114   UUGGGAAGUCAUCCUUGGCUC   1134 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3(LOC8284676)	coding protein	psRNATarget
XM_015720647.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   ==||*|||||||||||||||* targets:1252   UUGGGAAGUCAUCCUUGGCUC   1272 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3(LOC8284676)	coding protein	psRNATarget
XM_015720646.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   ==||*|||||||||||||||* targets:1352   UUGGGAAGUCAUCCUUGGCUC   1372 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3(LOC8284676)	coding protein	psRNATarget
XM_015720648.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   ==||*|||||||||||||||* targets:1411   UUGGGAAGUCAUCCUUGGCUC   1431 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8284676), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3(LOC8284676)	coding protein	psRNATarget
XM_002514028.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1375   CGGGCAAUUCAUCCUUGGCUU   1395 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X8, mRNA	nuclear transcription factor Y subunit A-3(LOC8272511)	coding protein	psRNATarget
XM_015716264.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1379   CGGGCAAUUCAUCCUUGGCUU   1399 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X6, mRNA	nuclear transcription factor Y subunit A-3(LOC8272511)	coding protein	psRNATarget
XM_015716263.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1391   CGGGCAAUUCAUCCUUGGCUU   1411 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-3(LOC8272511)	coding protein	psRNATarget
XM_015716259.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1394   CGGGCAAUUCAUCCUUGGCUU   1414 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-3(LOC8272511)	coding protein	psRNATarget
XM_015716265.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1689   CGGGCAAUUCAUCCUUGGCUU   1709 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X7, mRNA	nuclear transcription factor Y subunit A-3(LOC8272511)	coding protein	psRNATarget
XM_015716262.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1705   CGGGCAAUUCAUCCUUGGCUU   1725 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-3(LOC8272511)	coding protein	psRNATarget
XM_015716261.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1709   CGGGCAAUUCAUCCUUGGCUU   1729 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-3(LOC8272511)	coding protein	psRNATarget
XM_015716260.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:2293   CGGGCAAUUCAUCCUUGGCUU   2313 Target Full Sequence	2.0	PREDICTED: Ricinus communis nuclear transcription factor Y subunit A-3 (LOC8272511), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-3(LOC8272511)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).