ncRNA ID | ath-miRf10259-npr |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 21 |
Mature sequence(if miRNA) | NA - UAUCUCUGCAACUGCAACUGC - NA |
Stem-loop(if miRNA) |
                  A     A GAA    AACAGAUCU       -CAACUUUCUAU G CAAGCAGUUGCAGUUGCA AGAUA A   CUUA         ACGUGUA            G A |||||||||||||||||| ||||| |   ||||         |||||||            | GUUCGUCAACGUCAACGU UCUAU U   GAGU         UGUACAU            C G                   C     A -AA    -AAAUAAUC       AUUUCGACAAAC A |
Stem-loop sequence | CAAGCAGUUGCAGUUGCAAAGAUAAAGAACUUAAACAGAUCUACGUGUACAACUUUCUAUGGAGACCAAACAGCUUUAUACAUGUCUAAUAAAUGAGAAUAUAUCUCUGCAACUGCAACUGCUUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001339732.1 |
|
2.5 | Arabidopsis thaliana ROTUNDIFOLIA like 7 (RTFL7), mRNA | ROTUNDIFOLIA like 7(RTFL7) | coding protein | psRNATarget | |||||||||
NM_127498.3 |
|
2.5 | Arabidopsis thaliana AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein mRNA | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein(AT2G19400) | coding protein | psRNATarget | |||||||||
AF370516.1 |
|
2.5 | Arabidopsis thaliana putative protein kinase (At2g19400; F27F23.20) mRNA, complete cds | NA | coding protein | psRNATarget |