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BaseInfo

ncRNA ID	rco-miR319d
Species	Ricinus communis
Class	miRNA
Genome position	28207:60971-61157 [+]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	162 - UUGGACUGAAGGGAGCUCCUU - 182
Stem-loop(if miRNA)	--CCA                      --A   A   CUU  A  C  C  A  ---   G    CU         A   AAU      CAAGU     A      AAGGAGCUCCUUUCAGUCCAAU   UGG GGG   AG AG GG AA GA   GCU CCAU  CAUGCAUUA GGC   ACUUGA     UUUUC C      ||||||||||||||||||||||   ||| |||   || || || || ||   ||| ||||  ||||||||| |||   ||||||     ||||| A      UUCCUCGAGGGAAGUCAGGUUA   ACC CCC   UC UC CC UU CU   CGA GGUG  GUACGUGGU CCG   UGAACU     AAAAG G CUUUC                      CCC   -   --U  C  -  -  C  CAA   G    UG         -   GUU      ---CU     U
Stem-loop sequence	CCAAAGGAGCUCCUUUCAGUCCAAUAUGGAGGGCUUAGAAGCGGCAAAGAGCUGCCAUCUCAUGCAUUAAGGCAAUACUUGACAAGUUUUUCACAGUGAAAAUCUCAAGUUUGGCCUGGUGCAUGGUGUGGGAGCAACUCCUUCCCUCCUUCCCCCACCCAUUGGACUGAAGGGAGCUCCUUCUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002525092.2	ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1   =|||=|*|||||||||||||| targets:1236   GAGGGGAUCCCUUCAGUCCAA   1256 Target Full Sequence	2.0	PREDICTED: Ricinus communis transcription factor TCP4 (LOC8264223), mRNA	transcription factor TCP4(LOC8264223)	coding protein	psRNATarget
XM_015719514.1	ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1   *|||=|**||||||||||||| targets:1736   UAGGGGGACCCUUCAGUCCAA   1756 Target Full Sequence	3.0	PREDICTED: Ricinus communis transcription factor TCP2 (LOC8262273), transcript variant X4, mRNA	transcription factor TCP2(LOC8262273)	coding protein	psRNATarget
XM_002519596.2	ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1   *|||=|**||||||||||||| targets:2011   UAGGGGGACCCUUCAGUCCAA   2031 Target Full Sequence	3.0	PREDICTED: Ricinus communis transcription factor TCP2 (LOC8262273), transcript variant X1, mRNA	transcription factor TCP2(LOC8262273)	coding protein	psRNATarget
XM_015719512.1	ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1   *|||=|**||||||||||||| targets:2020   UAGGGGGACCCUUCAGUCCAA   2040 Target Full Sequence	3.0	PREDICTED: Ricinus communis transcription factor TCP2 (LOC8262273), transcript variant X2, mRNA	transcription factor TCP2(LOC8262273)	coding protein	psRNATarget
XM_015719513.1	ncRNA:21   UUCCUCGAGGGAAGUCAGGUU   1   *|||=|**||||||||||||| targets:2053   UAGGGGGACCCUUCAGUCCAA   2073 Target Full Sequence	3.0	PREDICTED: Ricinus communis transcription factor TCP2 (LOC8262273), transcript variant X3, mRNA	transcription factor TCP2(LOC8262273)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).