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BaseInfo

ncRNA ID rco-miR156d
Species Ricinus communis
Class miRNA
Genome position 28008:20214-20306 [-]
Reference genome TIGR0.1
Source miRBase
Length 21
Mature sequence(if miRNA) 68 - UGACAGAAGAGAGUGAGCACA - 88
Stem-loop(if miRNA) --  GA         -     -       A   AG   AUU      
  GA  CUGACAGAA GAGAG UGAGCAC CGC  GCA   GUAUGGA
  ||  ||||||||| ||||| ||||||| |||  |||   ||||||A
  CU  GACUGUCUU CUCUC ACUCGUG GUG  CGU   CAUACCG
AC  UC         U     C       C   GA   CAC      
Stem-loop sequence GAGACUGACAGAAGAGAGUGAGCACACGCAGGCAAUUGUAUGGAAGCCAUACCACUGCAGGUGCGUGCUCACCUCUCUUUCUGUCAGCUUCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015723469.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1173   UGUGCUCUCUCUCUUCUGUCA   1193

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X3, mRNA squamosa promoter-binding-like protein 13A(LOC8269206) coding protein psRNATarget
XM_015727314.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1061   UGUGCUCUCUCUCUUCUGUCA   1081

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 9 (LOC8277452), mRNA squamosa promoter-binding-like protein 9(LOC8277452) coding protein psRNATarget
XM_015723461.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1298   UGUGCUCUCUCUCUUCUGUCA   1318

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X1, mRNA squamosa promoter-binding-like protein 13A(LOC8269206) coding protein psRNATarget
XM_002511111.2
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1326   UGUGCUCUCUCUCUUCUGUCA   1346

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 13A (LOC8269206), transcript variant X2, mRNA squamosa promoter-binding-like protein 13A(LOC8269206) coding protein psRNATarget
XM_015729066.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1314   UGUGCUCUCUCUCUUCUGUCA   1334

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X3, mRNA squamosa promoter-binding-like protein 6(LOC8264608) coding protein psRNATarget
XM_015729065.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1182   UGUGCUCUCUCUCUUCUGUCA   1202

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X2, mRNA squamosa promoter-binding-like protein 6(LOC8264608) coding protein psRNATarget
XM_002512008.2
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1309   UGUGCUCUCUCUCUUCUGUCA   1329

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X4, mRNA squamosa promoter-binding-like protein 6(LOC8264608) coding protein psRNATarget
XM_015729064.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:1313   UGUGCUCUCUCUCUUCUGUCA   1333

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8264608), transcript variant X1, mRNA squamosa promoter-binding-like protein 6(LOC8264608) coding protein psRNATarget
XM_015727577.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:808   CGUGCUCUCUCUCUUCUGUCA   828

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 7 (LOC8265833), mRNA squamosa promoter-binding-like protein 7(LOC8265833) coding protein psRNATarget
XM_015716677.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1090   GGUGCUCUCUCUCUUCUGUCA   1110

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X2, mRNA squamosa promoter-binding-like protein 16(LOC8286773) coding protein psRNATarget
XM_015716678.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1382   GGUGCUCUCUCUCUUCUGUCA   1402

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X3, mRNA squamosa promoter-binding-like protein 16(LOC8286773) coding protein psRNATarget
XM_015716676.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:1391   GGUGCUCUCUCUCUUCUGUCA   1411

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 16 (LOC8286773), transcript variant X1, mRNA squamosa promoter-binding-like protein 16(LOC8286773) coding protein psRNATarget
XM_015716704.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:2001   CGUGCUCUCUCUCUUCUGUCA   2021

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 2 (LOC8286787), transcript variant X2, mRNA squamosa promoter-binding-like protein 2(LOC8286787) coding protein psRNATarget
XM_015716703.1
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  *||||||*|||||||||||||
targets:2237   CGUGCUCUCUCUCUUCUGUCA   2257

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 2 (LOC8286787), transcript variant X1, mRNA squamosa promoter-binding-like protein 2(LOC8286787) coding protein psRNATarget
XM_002514579.2
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  |*|||||*|||||||||||||
targets:1838   UCUGCUCUCUCUCUUCUGUCA   1858

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 6 (LOC8265059), mRNA squamosa promoter-binding-like protein 6(LOC8265059) coding protein psRNATarget
XM_002533040.2
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  **|||||*|||||||||||||
targets:628   CAUGCUCCCUCUCUUCUGUCA   648

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 3 (LOC8266790), mRNA squamosa promoter-binding-like protein 3(LOC8266790) coding protein psRNATarget
XM_002509404.2
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  **|||||*|||||||||||||
targets:838   AAUGCUCUCUCUCUUCUGUCA   858

1.0 PREDICTED: Ricinus communis squamosa promoter-binding-like protein 3 (LOC8258445), mRNA squamosa promoter-binding-like protein 3(LOC8258445) coding protein psRNATarget
XM_002519143.2
ncRNA:21   ACACGAGUGAGAGAAGACAGU   1
  **|||*|||||||||||||=|
targets:312   ACUGCACACUCUCUUCUGUUA   332

2.5 PREDICTED: Ricinus communis protein trichome birefringence-like 4 (LOC8258779), mRNA protein trichome birefringence-like 4(LOC8258779) coding protein psRNATarget

Reference

1 PMID:19942686
"Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants";
Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M;
Nucleic Acids Res. 38:981-995(2010).
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