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BaseInfo

ncRNA ID	rco-miR166e
Species	Ricinus communis
Class	miRNA
Genome position	27964:24073-24203 [+]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	106 - UCGGACCAGGCUUCAUUCCCC - 126
Stem-loop(if miRNA)	--  A        UU      CU   G   U  C  --U     --   UUCAAUUUU    AUAG    A   UG GGGGAAUG  GUCUGG  CGA GAC CU UU   UGAUC  CCU         CUCC    AUCC A   || ||||||||  ||||||  ||| ||| || ||   |||||  |||         ||||    |||| U   AC CCCCUUAC  CGGACC  GCU CUG GA AG   ACUAG  GGG         GAGG    UAGG A UA  C        UU      AG   G   U  C  UUU     AU   --------U    GUUA    C
Stem-loop sequence	UGAGGGGAAUGUUGUCUGGCUCGAGGACUCUCUUUUGAUCCCUUUCAAUUUUCUCCAUAGAUCCAAUACGGAUAUUGGGAGUGGGUAGAUCAUUUGACAGUGUCGUCGGACCAGGCUUCAUUCCCCCCAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002515931.2	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||||||||||= targets:1744   CUGGAAUGAAGCCUGGUCCGG   1764 Target Full Sequence	1.0	PREDICTED: Ricinus communis homeobox-leucine zipper protein ATHB-15 (LOC8273792), mRNA	homeobox-leucine zipper protein ATHB-15(LOC8273792)	coding protein	psRNATarget
XM_015717688.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:804   CUGGGAUGAAGCCUGGUCCGG   824 Target Full Sequence	2.0	PREDICTED: Ricinus communis homeobox-leucine zipper protein ATHB-8 (LOC8275667), mRNA	homeobox-leucine zipper protein ATHB-8(LOC8275667)	coding protein	psRNATarget
XM_002529900.2	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1273   CUGGGAUGAAGCCUGGUCCGG   1293 Target Full Sequence	2.0	PREDICTED: Ricinus communis homeobox-leucine zipper protein REVOLUTA (LOC8266275), mRNA	homeobox-leucine zipper protein REVOLUTA(LOC8266275)	coding protein	psRNATarget
XM_015721762.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||=|||||||||||||||= targets:1786   UUGGGAUGAAGCCUGGUCCGG   1806 Target Full Sequence	2.0	PREDICTED: Ricinus communis homeobox-leucine zipper protein ATHB-14 (LOC8265527), mRNA	homeobox-leucine zipper protein ATHB-14(LOC8265527)	coding protein	psRNATarget
XM_015723880.1	ncRNA:21   CCCCUUACUUCGGACCAGGCU   1   **||||||||||=|||||||= targets:736   AAGGAAUGAAGCUUGGUCCGG   756 Target Full Sequence	2.5	PREDICTED: Ricinus communis uncharacterized protein DDB_G0288629 (LOC8277364), mRNA	uncharacterized protein DDB_G0288629(LOC8277364)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).