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BaseInfo

ncRNA ID	rco-miR172
Species	Ricinus communis
Class	miRNA
Genome position	27568:52781-52924 [+]
Reference genome	TIGR0.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	119 - GGAAUCUUGAUGAUGCUGCAG - 139
Stem-loop(if miRNA)	--   A  G                A  AACUU    -U    -   G       UU UG UCCCUUUUCUUUUU   CUG UG AGCAUCAUCAAGAUUC CA     UAUC  AGGG CUA UGGGUUG  G  G              C   ||| || |||||||||||||||| ||     ||||  |||| ||| |||||||  |  |              U   GGC AC UCGUAGUAGUUCUAAG GU     AUAG  UCCC GAU ACCUAAC  C  U              U AC   G  G                G  -----    UU    U   A       UU GU CUCUUUUUCUUUUU
Stem-loop sequence	CUGAUGGAGCAUCAUCAAGAUUCACAAACUUUAUCUAGGGCUAGUGGGUUGUUGUGGUCCCUUUUCUUUUUCUUUUUUUCUUUUUCUCUUGCUUCAAUCCAAUAGUCCCUUUGAUAUGGGAAUCUUGAUGAUGCUGCAGCGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_002534353.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||| targets:1241   CUGCAGCAUCAUCAGGAUUCC   1261 Target Full Sequence	1.5	PREDICTED: Ricinus communis AP2-like ethylene-responsive transcription factor TOE3 (LOC8260999), mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC8260999)	coding protein	psRNATarget
XM_015726023.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1838   CUGCAGCAUCAUCAGGAUUCU   1858 Target Full Sequence	2.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8264035), transcript variant X4, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8264035)	coding protein	psRNATarget
XM_015726022.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1841   CUGCAGCAUCAUCAGGAUUCU   1861 Target Full Sequence	2.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8264035), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8264035)	coding protein	psRNATarget
XM_002530201.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1883   CUGCAGCAUCAUCAGGAUUCU   1903 Target Full Sequence	2.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8264035), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8264035)	coding protein	psRNATarget
XM_015726021.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||= targets:1886   CUGCAGCAUCAUCAGGAUUCU   1906 Target Full Sequence	2.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8264035), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8264035)	coding protein	psRNATarget
XM_015722984.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||* targets:1468   CUGCAGCAUCAUCAGGAUUCG   1488 Target Full Sequence	2.5	PREDICTED: Ricinus communis floral homeotic protein APETALA 2 (LOC8283831), transcript variant X3, mRNA	floral homeotic protein APETALA 2(LOC8283831)	coding protein	psRNATarget
XM_002525144.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||* targets:1510   CUGCAGCAUCAUCAGGAUUCG   1530 Target Full Sequence	2.5	PREDICTED: Ricinus communis floral homeotic protein APETALA 2 (LOC8283831), transcript variant X2, mRNA	floral homeotic protein APETALA 2(LOC8283831)	coding protein	psRNATarget
XM_015722983.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   ||||||||||||||=|||||* targets:1513   CUGCAGCAUCAUCAGGAUUCG   1533 Target Full Sequence	2.5	PREDICTED: Ricinus communis floral homeotic protein APETALA 2 (LOC8283831), transcript variant X1, mRNA	floral homeotic protein APETALA 2(LOC8283831)	coding protein	psRNATarget
XM_015722225.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   =*||||||||||||=|||||* targets:1844   UCGCAGCAUCAUCAGGAUUCG   1864 Target Full Sequence	2.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8281967), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8281967)	coding protein	psRNATarget
XM_015722223.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGG   1   =*||||||||||||=|||||* targets:1844   UCGCAGCAUCAUCAGGAUUCG   1864 Target Full Sequence	2.5	PREDICTED: Ricinus communis ethylene-responsive transcription factor RAP2-7 (LOC8281967), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC8281967)	coding protein	psRNATarget

Reference

1	PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"; Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M; Nucleic Acids Res. 38:981-995(2010).