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BaseInfo

ncRNA ID ath-miRf10258-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - CCCAUGCCUUUCUUGUGUAA - NA
Stem-loop(if miRNA)    -   GAG        --       AAC UG       A  C G    -----UUUAC   CAAUAC
GAC UCA   ACACGAGA  GGCAUGG   U  GCGAUGA GG A AAGC          GGU      C
||| |||   ||||||||  |||||||   |  ||||||| || | ||||          |||
CUG AGU   UGUGUUCU  CCGUACC   G  CGCUGCU CC U UUCG          UCG      U
   C   AAA        UU       --C GU       -  - G    CAAUAACCCA   ACUCGG
Stem-loop sequence GACUCAGAGACACGAGAGGCAUGGAACUUGGCGAUGAAGGCAGAAGCUUUACGGUCAAUACCUGGCUCAGCUACCCAAUAACGCUUGUCCUCGUCGCUGGCCCAUGCCUUUCUUGUGUAAAUGACGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_180552.1
ncRNA:20   AAUGUGUUCUUUCCGUACCC   1
  ||||||||||||||||||||
targets:63   UUACACAAGAAAGGCAUGGG   82

0.0 Arabidopsis thaliana hypothetical protein partial mRNA hypothetical protein(AT5G26620) coding protein psRNATarget
AY648334.1
ncRNA:20   AAUGUGUUCUUUCCGUACCC   1
  ||||*|||||||||=|||||
targets:696   UUACUCAAGAAAGGUAUGGG   715

2.5 Arabidopsis thaliana hypothetical protein (At3g17200) mRNA, complete cds NA coding protein psRNATarget