Search result

BaseInfo

ncRNA ID	ath-miRf10257-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GUGUGCUCACUCUCUAUCCG - NA
Stem-loop(if miRNA)	A  -                    GGCU   UU    AUUUG GGUGAC GA AGAGAGUGAGCACACAUGGU    UUC  GCAU     A |||||| || ||||||||||||||||||||    |||  ||||     A CCACUG CU UCUCUCACUCGUGUGUAUCG    AAG  CGUA     G       C  A                    ----   UU    CCUUG
Stem-loop sequence	GGUGACAGAAGAGAGUGAGCACACAUGGUGGCUUUCUUGCAUAUUUGAAGGUUCCAUGCUUGAAGCUAUGUGUGCUCACUCUCUAUCCGUCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK221946.1	ncRNA:20   GCCUAUCUCUCACUCGUGUG   1   |*||||||||||||||||=| targets:250   CAGAUAGAGAGUGAGCACGC   269 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for putative poly(A) binding protein, complete cds, clone: RAFL22-47-D09	NA	coding protein	psRNATarget
BX821408.1	ncRNA:20   GCCUAUCUCUCACUCGUGUG   1   |*||||||||||||||||=| targets:305   CAGAUAGAGAGUGAGCACGC   324 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL3ZB01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY079389.1	ncRNA:20   GCCUAUCUCUCACUCGUGUG   1   |*||||||||||||||||=| targets:1762   CAGAUAGAGAGUGAGCACGC   1781 Target Full Sequence	2.5	Arabidopsis thaliana putative poly(A) binding protein (At2g23350) mRNA, complete cds	NA	coding protein	psRNATarget
AY050859.1	ncRNA:20   GCCUAUCUCUCACUCGUGUG   1   |*||||||||||||||||=| targets:1916   CAGAUAGAGAGUGAGCACGC   1935 Target Full Sequence	2.5	Arabidopsis thaliana putative poly(A) binding protein (At2g23350) mRNA, complete cds	NA	coding protein	psRNATarget
AF360217.1	ncRNA:20   GCCUAUCUCUCACUCGUGUG   1   |*||||||||||||||||=| targets:1915   CAGAUAGAGAGUGAGCACGC   1934 Target Full Sequence	2.5	Arabidopsis thaliana putative poly(A) binding protein (At2g23350) mRNA, complete cds	NA	coding protein	psRNATarget
NM_127899.4	ncRNA:20   GCCUAUCUCUCACUCGUGUG   1   |*||||||||||||||||=| targets:2056   CAGAUAGAGAGUGAGCACGC   2075 Target Full Sequence	2.5	Arabidopsis thaliana poly(A) binding protein 4 (PAB4), mRNA	poly(A) binding protein 4(PAB4)	coding protein	psRNATarget