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BaseInfo

ncRNA ID	osa-miRf12088-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - GGUCCACAUGUCAGCCUCUUUUC - NA
Stem-loop(if miRNA)	UUUU -       AAUAAAAG CCACCUGGGUCCACAUGUCAGCCUC    C CCAUUCA        U |||||||||||||||||||||||||    | |||||||        G GGUGGGCCCGGGUGUAUAGUCGGAG    G GGUAGGU        A                          -UGU U       CAGGGUGC
Stem-loop sequence	CCACCUGGGUCCACAUGUCAGCCUCUUUUCCCAUUCAAAUAAAAGUGACGUGGGACUGGAUGGUGUGUGAGGCUGAUAUGUGGGCCCGGGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK066530.1	ncRNA:23   CUUUUCUCCG-ACUGUACACCUGG   1   *=||||||||-||||||||||||| targets:928   AGAAAGAGGCAUGACAUGUGGACC   951 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013072I02, full insert sequence	NA	coding protein	psRNATarget
XM_015767270.1	ncRNA:23   CUUUUCUCCGACUGUACACCUGG   1   |=|=|||||*||||||||||=|| targets:1165   GGAGAGAGGAUGACAUGUGGGCC   1187 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3-like (LOC107279894), mRNA	S-type anion channel SLAH3-like(LOC107279894)	coding protein	psRNATarget
AK289042.1	ncRNA:23   CUUUUCUCCGACUGUACACCUGG   1   |=|=|||||*||||||||||=|| targets:1371   GGAGAGAGGAUGACAUGUGGGCC   1393 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090092D10, full insert sequence	NA	coding protein	psRNATarget
XM_015763946.1	ncRNA:23   CUUU-UCUCCGACUGUACACCUGG   1   ||=|-|||||*||||||||||||| targets:999   GAGAGAGAGGAUGACAUGUGGACC   1022 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable serine/threonine-protein kinase At1g54610 (LOC107279713), mRNA	probable serine/threonine-protein kinase At1g54610(LOC107279713)	coding protein	psRNATarget
AK073133.1	ncRNA:23   CUUUUCUCCGACUGUACACCUGG   1   ***=*|||||||||||||||=|| targets:1092   ACUGUGAGGCUGACAUGUGGGCC   1114 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033023E13, full insert sequence	NA	coding protein	psRNATarget
CT832042.1	ncRNA:23   CUUUUCUCCGACUGUACACCUGG   1   ***=*|||||||||||||||=|| targets:1107   ACUGUGAGGCUGACAUGUGGGCC   1129 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103E02, full insert sequence	NA	coding protein	psRNATarget
XM_015776789.1	ncRNA:23   CUUUUCUCCGACUGUACACCUGG   1   ***=*|||||||||||||||=|| targets:1152   ACUGUGAGGCUGACAUGUGGGCC   1174 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor RAP2-12 (LOC4331843), mRNA	ethylene-responsive transcription factor RAP2-12(LOC4331843)	coding protein	psRNATarget
AJ304840.1	ncRNA:23   CUUUUCUCCGACUGUACACCUGG   1   ***=*|||||||||||||||=|| targets:1086   ACUGUGAGGCUGACAUGUGGGCC   1108 Target Full Sequence	2.5	Oryza sativa mRNA for ethylene responsive protein (ebp-89 gene)	NA	coding protein	psRNATarget
AY323478.1	ncRNA:23   CUUUUCUCCGACUGUACACCUGG   1   ***=*|||||||||||||||=|| targets:1118   ACUGUGAGGCUGACAUGUGGGCC   1140 Target Full Sequence	2.5	Oryza sativa (japonica cultivar-group) ap2 domain containing protein (cap2) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015787308.1	ncRNA:23   CUUUUCUCCGACUGUACACCUGG   1   ***=||*|||||=|||||||||| targets:1344   UUUGAGUGGCUGGCAUGUGGACC   1366 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281372 (LOC107281372), mRNA	uncharacterized LOC107281372(LOC107281372)	coding protein	psRNATarget