Search result

BaseInfo

ncRNA ID	osa-miRf12081-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CCUCAGCACCAGCGCUUGUG - NA
Stem-loop(if miRNA)	A  A C         C   CCGC    A    - AAGGUUGGAGG CAGCGCCACAAGC CU G GCUGAGGUC UAC    AGCC UCCA G           A ||||||||||||| || | ||||||||| |||    |||| |||| |           C GUCGCGGUGUUCG GA C CGACUCCAG GUG    UCGG UGGA C           C              C  C A         C   --AA    -    G CGGCUCCGGGU
Stem-loop sequence	CAGCGCCACAAGCACUAGCGCUGAGGUCCUACCCGCAGCCAUCCAGAAGGUUGGAGGACCUGGGCCUCGGCCGAGGUGGCUAAGUGCGACCUCAGCACCAGCGCUUGUGGCGCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015757891.1	ncRNA:20   GUGUUCGCGACCACGACUCC   1   |=|*=||||||||||||||| targets:1748   CGCCGGCGCUGGUGCUGAGG   1767 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9267719 (LOC9267719), mRNA	uncharacterized LOC9267719(LOC9267719)	coding protein	psRNATarget
EF575940.1	ncRNA:20   GUGUUCGCGACCACGACUCC   1   |||||*|*|||||||||||| targets:313   CACAAUCUCUGGUGCUGAGG   332 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) clone OSE-385-480-B9 peroxiredoxin 5 cell rescue, defense and virulence mRNA, partial cds	NA	coding protein	psRNATarget
AF203879.1	ncRNA:20   GUGUUCGCGACCACGACUCC   1   |||||*|*|||||||||||| targets:489   CACAAUCUCUGGUGCUGAGG   508 Target Full Sequence	2.5	Oryza sativa peroxiredoxin mRNA, complete cds	NA	coding protein	psRNATarget
CT830615.1	ncRNA:20   GUGUUCGCGACCACGACUCC   1   |||||*|*|||||||||||| targets:545   CACAAUCUCUGGUGCUGAGG   564 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI031O20, full insert sequence	NA	coding protein	psRNATarget
AK058509.1	ncRNA:20   GUGUUCGCGACCACGACUCC   1   |||||*|*|||||||||||| targets:547   CACAAUCUCUGGUGCUGAGG   566 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-016-G06, full insert sequence	NA	coding protein	psRNATarget
CT833512.1	ncRNA:20   GUGUUCGCGACCACGACUCC   1   |||||*|*|||||||||||| targets:545   CACAAUCUCUGGUGCUGAGG   564 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI029H09, full insert sequence	NA	coding protein	psRNATarget
CT830614.1	ncRNA:20   GUGUUCGCGACCACGACUCC   1   |||||*|*|||||||||||| targets:545   CACAAUCUCUGGUGCUGAGG   564 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z53, full insert sequence	NA	coding protein	psRNATarget
XM_015766517.1	ncRNA:20   GUGUUCGCGACCACGACUCC   1   |||||*|*|||||||||||| targets:586   CACAAUCUCUGGUGCUGAGG   605 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group peroxiredoxin-2C (LOC4325511), mRNA	peroxiredoxin-2C(LOC4325511)	coding protein	psRNATarget