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BaseInfo

ncRNA ID	osa-miRf12047-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CCUCCUCAAGGACCGUAAAA - NA
Stem-loop(if miRNA)	C                      ---UGA GUACCAAAAAAAUUAGUGUAAAUUAUG GAGCAAUU UACGGUCCUUGAGGAGGUACCA      G                           A |||||||| ||||||||||||||||||||||      | CUCGUUAA AUGCCAGGAACUCCUCCAUGGU      G                           G         A                      UAAAAA AUAACAUUUAAACCAUGGAGUACCAUG
Stem-loop sequence	GAGCAAUUCUACGGUCCUUGAGGAGGUACCAUGAGGUACCAAAAAAAUUAGUGUAAAUUAUGAGGUACCAUGAGGUACCAAAUUUACAAUAGAAAAAUUGGUACCUCCUCAAGGACCGUAAAAUUGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF576317.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   ||||||*||||||||||||| targets:249   UUUUACUGUCCUUGAGGAGG   268 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) clone OSS-1-96-A1 protein kinase c conserved region 2 (calb) mRNA, partial cds	NA	coding protein	psRNATarget
AK104165.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   ||||||*||||||||||||| targets:712   UUUUACUGUCCUUGAGGAGG   731 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:006-212-C07, full insert sequence	NA	coding protein	psRNATarget
AK073631.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   ||||||*||||||||||||| targets:798   UUUUACUGUCCUUGAGGAGG   817 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033052D22, full insert sequence	NA	coding protein	psRNATarget
XM_015772115.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   ||||||*||||||||||||| targets:949   UUUUACUGUCCUUGAGGAGG   968 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group GTPase activating protein 1 (LOC4329192), mRNA	GTPase activating protein 1(LOC4329192)	coding protein	psRNATarget
XM_015760251.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   ||||||*||||||||||||| targets:43   UUUUACUGUCCUUGAGGAGG   62 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein FAR1-RELATED SEQUENCE 5-like (LOC107279278), mRNA	protein FAR1-RELATED SEQUENCE 5-like(LOC107279278)	coding protein	psRNATarget
AK288182.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   ||||||*||||||||||||| targets:1294   UUUUACUGUCCUUGAGGAGG   1313 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090005J12, full insert sequence	NA	coding protein	psRNATarget
XM_015757723.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   ||*|||||||=||||||||| targets:429   UUCUACGGUCUUUGAGGAGG   448 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group TD and POZ domain-containing protein 4 (LOC9271695), mRNA	TD and POZ domain-containing protein 4(LOC9271695)	coding protein	psRNATarget
AK288582.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   |||||=||||||||*||||| targets:2819   UUUUAUGGUCCUUGUGGAGG   2838 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence	NA	coding protein	psRNATarget
XM_015786627.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   ||*||=|||||||||||||* targets:541   UUCUAUGGUCCUUGAGGAGA   560 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281210 (LOC107281210), mRNA	uncharacterized LOC107281210(LOC107281210)	coding protein	psRNATarget
AK072846.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   ||*||||||||||*|||||| targets:1691   UUCUACGGUCCUUAAGGAGG   1710 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   ||*||||||||||*|||||| targets:2072   UUCUACGGUCCUUAAGGAGG   2091 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:20   AAAAUGCCAGGAACUCCUCC   1   ||*||||||||||*|||||| targets:2116   UUCUACGGUCCUUAAGGAGG   2135 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget