Search result

BaseInfo

ncRNA ID	osa-miRf12046-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GGGUGUAAGUGGCUAACCCG - NA
Stem-loop(if miRNA)	-   CUUA UAGGGGUGUAAGUGGCUAACCCGUAAACUCACUUA AGG    U ||||||||||||||||||||||||||||||||||| ||| AUUCCCACAUUUACCGAUUGGGUAUUUGAGUGAAU UCC    U                                    A   AAUU
Stem-loop sequence	UAGGGGUGUAAGUGGCUAACCCGUAAACUCACUUAAGGCUUAUUUUAACCUAUAAGUGAGUUUAUGGGUUAGCCAUUUACACCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015794926.1	ncRNA:20   GCCCAAUCGGUGAAUGU-GGG   1   |||||||||||||||||-||| targets:538   CGGGUUAGCCACUUACAACCC   558 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4346196), transcript variant X2, mRNA	disease resistance protein RGA2(LOC4346196)	coding protein	psRNATarget
XM_015794925.1	ncRNA:20   GCCCAAUCGGUGAAUGU-GGG   1   |||||||||||||||||-||| targets:671   CGGGUUAGCCACUUACAACCC   691 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4346196), transcript variant X1, mRNA	disease resistance protein RGA2(LOC4346196)	coding protein	psRNATarget
AK099583.1	ncRNA:20   GCCCAAUCGGUGAAUGU-GGG   1   |||||||||||||||||-||| targets:343   CGGGUUAGCCACUUACAACCC   363 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013042A20, full insert sequence	NA	coding protein	psRNATarget
AK107859.1	ncRNA:20   GCCCAAUCGGUGAAUGUGGG   1   =||*|||||||||||||||| targets:896   UGGAUUAGCCACUUACACCC   915 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-134-B05, full insert sequence	NA	coding protein	psRNATarget
XM_015769486.1	ncRNA:20   GCCCAAUCGGUGAAUGUGGG   1   =||*|||||||||||||||| targets:902   UGGAUUAGCCACUUACACCC   921 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329481 (LOC4329481), mRNA	uncharacterized LOC4329481(LOC4329481)	coding protein	psRNATarget
AK102148.1	ncRNA:20   GCCCAAUCGGUGAAUGUGGG   1   =||*|||||||||||||||| targets:909   UGGAUUAGCCACUUACACCC   928 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033086C12, full insert sequence	NA	coding protein	psRNATarget
AK107211.1	ncRNA:20   GCCCAAUCGGUGAAUGUGGG   1   |||*|||*|||||||||||| targets:878   CGGCUUACCCACUUACACCC   897 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-C02, full insert sequence	NA	coding protein	psRNATarget
XM_015783335.1	ncRNA:20   GCCCAAUCGGUGAAUGUGGG   1   |||*|||*|||||||||||| targets:1195   CGGCUUACCCACUUACACCC   1214 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group gibberellin 2-beta-dioxygenase (LOC4339310), mRNA	gibberellin 2-beta-dioxygenase(LOC4339310)	coding protein	psRNATarget
XM_015785563.1	ncRNA:20   GCCCAAUCGGUGAAUGUGGG   1   |||*|||*|||||||||||| targets:1898   CGGCUUACCCACUUACACCC   1917 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group lysosomal Pro-X carboxypeptidase (LOC4341667), transcript variant X1, mRNA	lysosomal Pro-X carboxypeptidase(LOC4341667)	coding protein	psRNATarget
AK068457.1	ncRNA:20   GCCCAAUCGGUGAAUGUGGG   1   |||*|||*|||||||||||| targets:1895   CGGCUUACCCACUUACACCC   1914 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013151A14, full insert sequence	NA	coding protein	psRNATarget