Search result

BaseInfo

ncRNA ID	osa-miRf12023-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - AAAAAACUCAACCUAGGAGGGG - NA
Stem-loop(if miRNA)	--C              C               -G  AACGAAUCUGGAUAAAUGGU UCC   AAAAAAAACUCAAC UAGGAGGGGAUGUGA  AC                    A |||   |||||||||||||| |||||||||||||||  ||                    G AGG   UUUUUUUUGAGUUG AUCCUCCCCUACACU  GG                    U    UAU              A               GG  AGGAUCAUGUUACUUAGACC
Stem-loop sequence	UCCCAAAAAAAACUCAACCUAGGAGGGGAUGUGAGACAACGAAUCUGGAUAAAUGGUAGUCCAGAUUCAUUGUACUAGGAGGGGUCACAUCCCCUCCUAAGUUGAGUUUUUUUUUAUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287725.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   =|||||||=||||||||||||| targets:1572   UCCCUCCUGGGUUGAGUUUUUU   1593 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065138D21, full insert sequence	NA	coding protein	psRNATarget
XM_015788811.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   |||||||||*|||||||||||| targets:999   CCCCUCCUAUGUUGAGUUUUUU   1020 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277009 (LOC107277009), transcript variant X1, mRNA	uncharacterized LOC107277009(LOC107277009)	coding protein	psRNATarget
AK102332.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   ||||||||||||||||||*||| targets:1809   CCCCUCCUAGGUUGAGUUCUUU   1830 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033090N02, full insert sequence	NA	coding protein	psRNATarget
XM_015789119.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   ||||||||||||||||||*||| targets:1405   CCCCUCCUAGGUUGAGUUCUUU   1426 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X1, mRNA	mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112)	coding protein	psRNATarget
XM_015789120.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   ||||||||||||||||||*||| targets:1310   CCCCUCCUAGGUUGAGUUCUUU   1331 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group mitochondrial ubiquitin ligase activator of NFKB 1 (LOC4344112), transcript variant X2, mRNA	mitochondrial ubiquitin ligase activator of NFKB 1(LOC4344112)	coding protein	psRNATarget
AK111992.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   ||||||||||||||||||*||| targets:749   CCCCUCCUAGGUUGAGUUCUUU   770 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-033-B02, full insert sequence	NA	coding protein	psRNATarget
AK067799.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   |||||=|||*|||||||||||| targets:2374   CCCCUUCUAUGUUGAGUUUUUU   2395 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013114C10, full insert sequence	NA	coding protein	psRNATarget
XM_015787705.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   |||||=|||*|||||||||||| targets:1688   CCCCUUCUAUGUUGAGUUUUUU   1709 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative lipase YDR444W (LOC4340169), transcript variant X2, mRNA	putative lipase YDR444W(LOC4340169)	coding protein	psRNATarget
XM_015787704.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   |||||=|||*|||||||||||| targets:1674   CCCCUUCUAUGUUGAGUUUUUU   1695 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative lipase YDR444W (LOC4340169), transcript variant X1, mRNA	putative lipase YDR444W(LOC4340169)	coding protein	psRNATarget
XM_015787706.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   |||||=|||*|||||||||||| targets:1607   CCCCUUCUAUGUUGAGUUUUUU   1628 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative lipase YDR444W (LOC4340169), transcript variant X3, mRNA	putative lipase YDR444W(LOC4340169)	coding protein	psRNATarget
XM_015778783.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   |||*||||||||||=||||||| targets:50   CCCAUCCUAGGUUGGGUUUUUU   71 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At2g24330-like (LOC107278684), mRNA	uncharacterized protein At2g24330-like(LOC107278684)	coding protein	psRNATarget
LQ236336.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   |||*||||||||||=||||||| targets:115   CCCAUCCUAGGUUGGGUUUUUU   136 Target Full Sequence	2.5	Sequence 2331 from Patent EP2985353	NA	coding protein	psRNATarget
JB164667.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   |||*||||||||||=||||||| targets:115   CCCAUCCUAGGUUGGGUUUUUU   136 Target Full Sequence	2.5	Sequence 2331 from Patent EP2559767	NA	coding protein	psRNATarget
HI404206.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   |||*||||||||||=||||||| targets:115   CCCAUCCUAGGUUGGGUUUUUU   136 Target Full Sequence	2.5	Sequence 2331 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015755190.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   =||||=|||||*|||||||||| targets:1992   UCCCUUCUAGGCUGAGUUUUUU   2013 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 78A9 (LOC4347650), mRNA	cytochrome P450 78A9(LOC4347650)	coding protein	psRNATarget
XM_015771126.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   *=|*||=*|||||||||||||| targets:1407   GUCGUCUGAGGUUGAGUUUUUU   1428 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 3-dehydrosphinganine reductase TSC10A (LOC4330439), mRNA	3-dehydrosphinganine reductase TSC10A(LOC4330439)	coding protein	psRNATarget
AK100715.1	ncRNA:22   GGGGAGGAUCCAACUCAAAAAA   1   =**||*||||||*||||||||| targets:2086   UGGCUGCUAGGUGGAGUUUUUU   2107 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023115O03, full insert sequence	NA	coding protein	psRNATarget