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BaseInfo

ncRNA ID	ath-miRf10249-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CUUGUACUGGUUAGCGUCCA - NA
Stem-loop(if miRNA)	AAUC      - GU        UA   G       U  A  UC CGGGA    GGACGC G  CAGUGCAA  GUU UAGAUGG GU UC  U |||||    |||||| |  ||||||||  ||| ||||||| || || GUCCU    CCUGCG U  GUCAUGUU  CAG GUUUACC CA AG  U      -GAA      A UG        CG   A       -  -  CA
Stem-loop sequence	CGGGAAAUCGGACGCGGUCAGUGCAAUAGUUGUAGAUGGUGUAUCUCUUACGAACCCAUUUGAGACGCUUGUACUGGUUAGCGUCCAAGUCCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK176228.1	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   |||||||||||||||||||| targets:778   UGGACGCUAACCAGUACAAG   797 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for endoxyloglucan transferase, complete cds, clone: RAFL23-11-K19	NA	coding protein	psRNATarget
AB026486.1	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   |||||||||||||||||||| targets:798   UGGACGCUAACCAGUACAAG   817 Target Full Sequence	0.0	Arabidopsis thaliana EXGT-A4 mRNA for endoxyloglucan transferase, complete cds	NA	coding protein	psRNATarget
BX830569.1	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   |||||||||||||||||||| targets:1155   UGGACGCUAACCAGUACAAG   1174 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZE02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX831074.1	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   |||||||||||||||||||| targets:1146   UGGACGCUAACCAGUACAAG   1165 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS55ZF02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_121390.5	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   |||||||||||||||||||| targets:1200   UGGACGCUAACCAGUACAAG   1219 Target Full Sequence	0.0	Arabidopsis thaliana xyloglucan endotransglucosylase/hydrolase 5 (XTH5), mRNA	xyloglucan endotransglucosylase/hydrolase 5(XTH5)	coding protein	psRNATarget
NM_001343298.1	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   |||||||||||||||||||| targets:1354   UGGACGCUAACCAGUACAAG   1373 Target Full Sequence	0.0	Arabidopsis thaliana xyloglucan endotransglucosylase/hydrolase 5 (XTH5), mRNA	xyloglucan endotransglucosylase/hydrolase 5(XTH5)	coding protein	psRNATarget
NM_001343297.1	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   |||||||||||||||||||| targets:1631   UGGACGCUAACCAGUACAAG   1650 Target Full Sequence	0.0	Arabidopsis thaliana xyloglucan endotransglucosylase/hydrolase 5 (XTH5), mRNA	xyloglucan endotransglucosylase/hydrolase 5(XTH5)	coding protein	psRNATarget
DQ446560.1	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   ||||*||||=|||||||||| targets:47   UGGAAGCUAGCCAGUACAAG   66 Target Full Sequence	2.5	Arabidopsis thaliana clone pENTR221-At2g24140 unknown (At2g24140) mRNA, complete cds	NA	coding protein	psRNATarget
AY084335.1	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   ||||*||||=|||||||||| targets:184   UGGAAGCUAGCCAGUACAAG   203 Target Full Sequence	2.5	Arabidopsis thaliana clone 104717 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_127975.2	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   ||||*||||=|||||||||| targets:216   UGGAAGCUAGCCAGUACAAG   235 Target Full Sequence	2.5	Arabidopsis thaliana myosin-J heavy chain-like protein (Protein of unknown function, DUF593) mRNA	myosin-J heavy chain-like protein (Protein of unknown function, DUF593)(AT2G24140)	coding protein	psRNATarget
NM_001335920.1	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   ||||*||||=|||||||||| targets:224   UGGAAGCUAGCCAGUACAAG   243 Target Full Sequence	2.5	Arabidopsis thaliana myosin-J heavy chain-like protein (Protein of unknown function, DUF593) mRNA	myosin-J heavy chain-like protein (Protein of unknown function, DUF593)(AT2G24140)	coding protein	psRNATarget
NM_001335919.1	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   ||||*||||=|||||||||| targets:328   UGGAAGCUAGCCAGUACAAG   347 Target Full Sequence	2.5	Arabidopsis thaliana myosin-J heavy chain-like protein (Protein of unknown function, DUF593) mRNA	myosin-J heavy chain-like protein (Protein of unknown function, DUF593)(AT2G24140)	coding protein	psRNATarget
NM_001335918.1	ncRNA:20   ACCUGCGAUUGGUCAUGUUC   1   ||||*||||=|||||||||| targets:459   UGGAAGCUAGCCAGUACAAG   478 Target Full Sequence	2.5	Arabidopsis thaliana myosin-J heavy chain-like protein (Protein of unknown function, DUF593) mRNA	myosin-J heavy chain-like protein (Protein of unknown function, DUF593)(AT2G24140)	coding protein	psRNATarget