ncRNA ID | osa-miRf11979-npr |
Species | Oryza sativa |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | PNRD |
Length | 20 |
Mature sequence(if miRNA) | NA - AGUUAAUGCCCGUCACAGAU - NA |
Stem-loop(if miRNA) |
     CUA                      --       CAAUCA   CUA    AAU     UCAC     A  AUAAU CGGGC   AGUUAAUGCCCGUCACAGAUGA  GUCAUCU      GGC   AGUU   GCCCG    AGAUG GU     C |||||   ||||||||||||||||||||||  |||||||      |||   ||||   |||||    ||||| ||     C GCCCG   UCAAUUACGGGCAGUGUCUAUU  CAGUAGA      CCG   UCAA   CGGGC    UCUAU CA     A      AUA                      CC       CACUAC   AUA    AUC     UAAC     C  AAAAA |
Stem-loop sequence | CGGGCCUAAGUUAAUGCCCGUCACAGAUGAGUCAUCUCAAUCAGGCCUAAGUUAAUGCCCGUCACAGAUGAGUAUAAUCCAAAAAAACCUAUCUCAAUCGGGCCUAAACUAUAGCCCAUCACAGAUGACCCUUAUCUGUGACGGGCAUUAACUAUAGCCCG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015768179.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277277 (LOC107277277), mRNA | uncharacterized LOC107277277(LOC107277277) | coding protein | psRNATarget | |||||||||
AK120293.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J013050K22, full insert sequence | NA | coding protein | psRNATarget |