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BaseInfo

ncRNA ID ath-miRf10245-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - UGUUGGCUUGAACGACGGCCAU - NA
Stem-loop(if miRNA)              -A  C       AAGG   CAAA            GUGGG    AAGA   C
CCGUGGCCGUCGU  GA GCCAACA    UGC    GGGACCAGAGUC     AGCU    GAG C
|||||||||||||  || |||||||    |||    ||||||||||||     ||||    ||| A
GGUACCGGCAGCA  UU CGGUUGU    ACG    UCCUGGUCUCGG     UCGA    CUC G
             AG  -       -CGA   -AUC            -----    ---G   A
Stem-loop sequence CCGUGGCCGUCGUAGACGCCAACAAAGGUGCCAAAGGGACCAGAGUCGUGGGAGCUAAGAGAGCCAGACUCGAGCUGGCUCUGGUCCUCUAGCAAGCUGUUGGCUUGAACGACGGCCAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT020368.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  ||||||||||||||||||||||
targets:148   AUGGCCGUCGUUCAAGCCAACA   169

0.0 Arabidopsis thaliana At4g38520 gene, complete cds NA coding protein psRNATarget
BT021094.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  ||||||||||||||||||||||
targets:173   AUGGCCGUCGUUCAAGCCAACA   194

0.0 Arabidopsis thaliana At4g38520 gene, complete cds NA coding protein psRNATarget
BX827483.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  ||||||||||||||||||||||
targets:599   AUGGCCGUCGUUCAAGCCAACA   620

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS61ZB10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY062454.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  ||||||||||||||||||||||
targets:610   AUGGCCGUCGUUCAAGCCAACA   631

0.0 Arabidopsis thaliana putative protein phosphatase-2c (At4g38520; F20M13.80) mRNA, complete cds NA coding protein psRNATarget
NM_202979.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  ||||||||||||||||||||||
targets:907   AUGGCCGUCGUUCAAGCCAACA   928

0.0 Arabidopsis thaliana Protein phosphatase 2C family protein mRNA Protein phosphatase 2C family protein(AT4G38520) coding protein psRNATarget
NM_120013.6
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  ||||||||||||||||||||||
targets:869   AUGGCCGUCGUUCAAGCCAACA   890

0.0 Arabidopsis thaliana Protein phosphatase 2C family protein mRNA Protein phosphatase 2C family protein(AT4G38520) coding protein psRNATarget
BX822400.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||=||=|||||||||||||
targets:536   AUGGCUGUUGUUCAAGCCAACA   557

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB34ZC06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY050805.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||=||=|||||||||||||
targets:350   AUGGCUGUUGUUCAAGCCAACA   371

2.0 Arabidopsis thaliana At3g51370 mRNA sequence NA coding protein psRNATarget
NM_001339513.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||=||=|||||||||||||
targets:443   AUGGCUGUUGUUCAAGCCAACA   464

2.0 Arabidopsis thaliana Protein phosphatase 2C family protein mRNA Protein phosphatase 2C family protein(AT3G51370) coding protein psRNATarget
NM_202682.2
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||=||=|||||||||||||
targets:375   AUGGCUGUUGUUCAAGCCAACA   396

2.0 Arabidopsis thaliana Protein phosphatase 2C family protein mRNA Protein phosphatase 2C family protein(AT3G51370) coding protein psRNATarget
AK316749.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||=||=|||||||||||||
targets:561   AUGGCUGUUGUUCAAGCCAACA   582

2.0 Arabidopsis thaliana AT3G51370 mRNA, partial sequence, clone: RAFL09-70-F07 NA coding protein psRNATarget
NM_114996.4
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||=||=|||||||||||||
targets:832   AUGGCUGUUGUUCAAGCCAACA   853

2.0 Arabidopsis thaliana Protein phosphatase 2C family protein mRNA Protein phosphatase 2C family protein(AT3G51370) coding protein psRNATarget
BT021925.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||*|||||||||||=||||
targets:157   AUGGCAGUCGUUCAAGCUAACA   178

2.5 Arabidopsis thaliana At3g55050 gene, complete cds NA coding protein psRNATarget
BT014892.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||*|||||||||||=||||
targets:439   AUGGCAGUCGUUCAAGCUAACA   460

2.5 Arabidopsis thaliana At3g55050 mRNA, complete cds NA coding protein psRNATarget
BX826194.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||*|||||||||||=||||
targets:465   AUGGCAGUCGUUCAAGCUAACA   486

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL90ZB09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_115363.3
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||*|||||||||||=||||
targets:471   AUGGCAGUCGUUCAAGCUAACA   492

2.5 Arabidopsis thaliana Protein phosphatase 2C family protein mRNA Protein phosphatase 2C family protein(AT3G55050) coding protein psRNATarget
AK229292.1
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||*|||||||||||=||||
targets:588   AUGGCAGUCGUUCAAGCUAACA   609

2.5 Arabidopsis thaliana mRNA for protein phosphatase 2C like protein, complete cds, clone: RAFL16-56-K13 NA coding protein psRNATarget
NM_202709.2
ncRNA:22   UACCGGCAGCAAGUUCGGUUGU   1
  |||||*|||||||||||=||||
targets:588   AUGGCAGUCGUUCAAGCUAACA   609

2.5 Arabidopsis thaliana Protein phosphatase 2C family protein mRNA Protein phosphatase 2C family protein(AT3G55050) coding protein psRNATarget
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