| ncRNA ID | ath-miR5654-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr1:11786292-11786371 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 3 - AUAAAUCCCAACAUCUUCCA - 22 |
| Stem-loop(if miRNA) |
-- CC C CU GAA AAAUAAAUCCCAA CAUCUUCCA UUA CGGC U C ||||||||||||| ||||||||| ||| |||| | UUUAUUUAGGGUU GUAGAAGGU AAU GUCG A A UC AA U AU GUU |
| Stem-loop sequence | AAAUAAAUCCCAACAUCUUCCACCUUACCGGCCUUGAACAUUGAUAGCUGUUAAAAUGGAAGAUGCUUUGGGAUUUAUUU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BT008757.1 |
|
2.5 | Arabidopsis thaliana At1g52770 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| BX813568.1 |
|
2.5 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB24ZG10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget | |||||||||
| BT002492.1 |
|
2.5 | Arabidopsis thaliana putative non-phototropic hypocotyl (At1g52770) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_104155.4 |
|
2.5 | Arabidopsis thaliana Phototropic-responsive NPH3 family protein mRNA | Phototropic-responsive NPH3 family protein(AT1G52770) | coding protein | psRNATarget |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |
| 2 | PMID:22221297
"Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology"; Zhang B, Xie D, Jin Z; J Integr Plant Biol. 54:73-86(2012). |