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BaseInfo

ncRNA ID	osa-miRf11949-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - UAGUACUAGGACGUGUCACAUCCC - NA
Stem-loop(if miRNA)	A   C     A              AUUA      ACAG   UCCCACAUCCUAGUACUACGAAU GGAUUUUGGUGG AUG GACAC UCCUAGUACUAUGA    AUCUGA    AGG                       U |||||||||||| ||| ||||| ||||||||||||||    ||||||    ||| CCUAAAACCACC UAC CUGUG AGGAUCAUGAUACU    UAGACU    UAG                       A             C   A     C              ----      ----   GCCUAUCCCCUCGGACAGGUCUA
Stem-loop sequence	GGAUUUUGGUGGAAUGCGACACAUCCUAGUACUAUGAAUUAAUCUGAACAGAGGUCCCACAUCCUAGUACUACGAAUUAAUCUGGACAGGCUCCCCUAUCCGGAUUCAGAUUCAUAGUACUAGGACGUGUCACAUCCCACCAAAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404529.1	ncRNA:24   CCCUACACUGUGCAGGAUCAUGAU   1   |||||||||||||||||||||||| targets:8   GGGAUGUGACACGUCCUAGUACUA   31 Target Full Sequence	0.0	Sequence 2654 from Patent EP2074227	NA	coding protein	psRNATarget
JB164990.1	ncRNA:24   CCCUACACUGUGCAGGAUCAUGAU   1   |||||||||||||||||||||||| targets:8   GGGAUGUGACACGUCCUAGUACUA   31 Target Full Sequence	0.0	Sequence 2654 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236659.1	ncRNA:24   CCCUACACUGUGCAGGAUCAUGAU   1   |||||||||||||||||||||||| targets:8   GGGAUGUGACACGUCCUAGUACUA   31 Target Full Sequence	0.0	Sequence 2654 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015758930.1	ncRNA:24   CCCUACACUGUGCAGGAUCAUGAU   1   *|||||||||||||||||||||*| targets:1100   UGGAUGUGACACGUCCUAGUACAA   1123 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348034 (LOC4348034), transcript variant X4, mRNA	uncharacterized LOC4348034(Os10g0130500)	coding protein	psRNATarget
XM_015758929.1	ncRNA:24   CCCUACACUGUGCAGGAUCAUGAU   1   *|||||||||||||||||||||*| targets:1649   UGGAUGUGACACGUCCUAGUACAA   1672 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348034 (LOC4348034), transcript variant X3, mRNA	uncharacterized LOC4348034(Os10g0130500)	coding protein	psRNATarget
AK120243.1	ncRNA:24   CCCUACACUGUGCAGGAUCAUGAU   1   *|||||||||||||||||||||*| targets:6270   UGGAUGUGACACGUCCUAGUACAA   6293 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013044H03, full insert sequence	NA	coding protein	psRNATarget
AK063369.1	ncRNA:24   CCCUACACUGUGCAGGAUCAUGAU   1   **||||||||||*||||||||||| targets:975   UAGAUGUGACACAUCCUAGUACUA   998 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-114-E01, full insert sequence	NA	coding protein	psRNATarget
XM_015794212.1	ncRNA:24   CCCUACACUGUGCAGGAUCAUGAU   1   **||||||||||*||||||||||| targets:1086   UAGAUGUGACACAUCCUAGUACUA   1109 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325579 (LOC4325579), mRNA	uncharacterized LOC4325579(LOC4325579)	coding protein	psRNATarget
XM_015761638.1	ncRNA:24   CCCUACACUGUGCAGGAUCAUGAU   1   *|||||*|||||*||||||||||| targets:3898   UGGAUGGGACACAUCCUAGUACUA   3921 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107278048), mRNA	putative receptor protein kinase ZmPK1(LOC107278048)	coding protein	psRNATarget